Strain Fitness in Escherichia coli BW25113 around b3193

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
3,335,030	+	yrbB	b3191	0.15	+0.9
3,335,030	+	yrbB	b3191	0.15	-0.0
3,335,030	+	yrbB	b3191	0.15	+0.3
3,335,030	+	yrbB	b3191	0.15	+1.3
3,335,030	+	yrbB	b3191	0.15	+0.7
3,335,030	+	yrbB	b3191	0.15	+0.7
3,335,031	+	yrbB	b3191	0.16	+1.5
3,335,031	+	yrbB	b3191	0.16	+0.5
3,335,036	+	yrbB	b3191	0.17	+0.2
3,335,036	+	yrbB	b3191	0.17	+0.1
3,335,038	-	yrbB	b3191	0.18	+1.1
3,335,038	-	yrbB	b3191	0.18	+0.8
3,335,038	-	yrbB	b3191	0.18	+0.6
3,335,038	-	yrbB	b3191	0.18	+0.6
3,335,038	-	yrbB	b3191	0.18	+0.6
3,335,059	-	yrbB	b3191	0.25	+0.2
3,335,060	-	yrbB	b3191	0.26	+0.5
3,335,098	+	yrbB	b3191	0.38	-0.4
3,335,098	+	yrbB	b3191	0.38	+0.1
3,335,102	+	yrbB	b3191	0.40	+0.7
3,335,102	+	yrbB	b3191	0.40	+0.3
3,335,120	+	yrbB	b3191	0.46	+0.6
3,335,128	-	yrbB	b3191	0.49	+0.2
3,335,137	+	yrbB	b3191	0.52	+1.1
3,335,142	+	yrbB	b3191	0.53	-1.2
3,335,142	+	yrbB	b3191	0.53	+0.5
3,335,162	-	yrbB	b3191	0.60	+0.9
3,335,165	+	yrbB	b3191	0.61	+0.6
3,335,198	+	yrbB	b3191	0.72	-0.4
3,335,198	+	yrbB	b3191	0.72	+0.7
3,335,205	+	yrbB	b3191	0.75	+0.8
3,335,236	-	yrbB	b3191	0.85	+0.8
3,335,340	+				-0.3
3,335,362	-	yrbC	b3192	0.13	+1.7
3,335,362	-	yrbC	b3192	0.13	+0.5
3,335,404	+	yrbC	b3192	0.20	+0.8
3,335,428	-	yrbC	b3192	0.24	+0.6
3,335,428	-	yrbC	b3192	0.24	+0.6
3,335,461	+	yrbC	b3192	0.29	+1.2
3,335,481	+	yrbC	b3192	0.32	+0.3
3,335,500	+	yrbC	b3192	0.35	+0.3
3,335,500	+	yrbC	b3192	0.35	+0.5
3,335,547	+	yrbC	b3192	0.42	+0.6
3,335,581	-	yrbC	b3192	0.48	+1.1
3,335,581	-	yrbC	b3192	0.48	+0.1
3,335,583	-	yrbC	b3192	0.48	+0.9
3,335,627	-	yrbC	b3192	0.55	+0.2
3,335,627	-	yrbC	b3192	0.55	+1.0
3,335,649	+	yrbC	b3192	0.58	+0.5
3,335,655	+	yrbC	b3192	0.59	+0.7
3,335,655	+	yrbC	b3192	0.59	+1.0
3,335,663	+	yrbC	b3192	0.61	+0.4
3,335,665	+	yrbC	b3192	0.61	+0.5
3,335,666	+	yrbC	b3192	0.61	+0.8
3,335,674	-	yrbC	b3192	0.62	+0.8
3,335,674	-				+4.5
3,335,674	-	yrbC	b3192	0.62	+1.3
3,335,674	-	yrbC	b3192	0.62	+0.1
3,335,674	-	yrbC	b3192	0.62	+0.6
3,335,680	-	yrbC	b3192	0.63	+0.3
3,335,680	-	yrbC	b3192	0.63	+1.5
3,335,682	+	yrbC	b3192	0.64	+0.5
3,335,682	+	yrbC	b3192	0.64	+0.3
3,335,711	+	yrbC	b3192	0.68	+0.8
3,335,730	+	yrbC	b3192	0.71	+0.4
3,335,732	-	yrbC	b3192	0.71	+0.9
3,335,732	-	yrbC	b3192	0.71	+1.2
3,335,732	-	yrbC	b3192	0.71	+0.7
3,335,825	+	yrbC	b3192	0.86	-0.5
3,335,827	-	yrbC	b3192	0.86	+0.4
3,335,827	-	yrbC	b3192	0.86	+0.4
3,335,833	-	yrbC	b3192	0.87	+0.8
3,335,838	-	yrbC	b3192	0.88	+0.2
3,335,847	-	yrbC	b3192	0.89	+1.5
3,335,953	-				-0.0
3,336,026	+	yrbD	b3193	0.17	-0.2
3,336,052	+	yrbD	b3193	0.22	+0.4
3,336,052	+	yrbD	b3193	0.22	+0.1
3,336,068	+	yrbD	b3193	0.25	+0.9
3,336,097	+	yrbD	b3193	0.30	+1.1
3,336,110	-	yrbD	b3193	0.32	+0.6
3,336,158	+	yrbD	b3193	0.41	-0.1
3,336,163	+	yrbD	b3193	0.42	+1.3
3,336,173	+	yrbD	b3193	0.44	+0.9
3,336,173	+	yrbD	b3193	0.44	+0.9
3,336,199	-	yrbD	b3193	0.48	+0.6
3,336,209	-	yrbD	b3193	0.50	+0.9
3,336,267	+	yrbD	b3193	0.61	+0.6
3,336,271	+	yrbD	b3193	0.61	+0.4
3,336,286	+	yrbD	b3193	0.64	+0.9
3,336,294	-	yrbD	b3193	0.66	+0.8
3,336,294	-	yrbD	b3193	0.66	+0.8
3,336,294	-	yrbD	b3193	0.66	+0.3
3,336,308	-	yrbD	b3193	0.68	+1.1
3,336,332	+	yrbD	b3193	0.72	+0.5
3,336,340	-	yrbD	b3193	0.74	+0.5
3,336,362	+	yrbD	b3193	0.78	+1.2
3,336,362	-	yrbD	b3193	0.78	+0.7
3,336,367	+	yrbD	b3193	0.79	+0.5
3,336,377	+	yrbD	b3193	0.81	+0.2
3,336,380	-	yrbD	b3193	0.81	+1.0
3,336,380	-	yrbD	b3193	0.81	+0.2
3,336,385	-	yrbD	b3193	0.82	-0.6
3,336,387	-	yrbD	b3193	0.82	+0.5
3,336,402	+	yrbD	b3193	0.85	+0.2
3,336,440	-				+0.6
3,336,440	-				+0.3
3,336,445	+				-0.1
3,336,445	+				-0.2
3,336,453	-				-0.4
3,336,453	-				-0.4
3,336,526	+				+0.4
3,336,619	+	yrbE	b3194	0.17	+0.4
3,336,619	-	yrbE	b3194	0.17	+0.8
3,336,636	+	yrbE	b3194	0.19	+0.1
3,336,636	+	yrbE	b3194	0.19	+0.1
3,336,666	-				+0.7
3,336,669	-	yrbE	b3194	0.23	+0.1
3,336,678	+	yrbE	b3194	0.24	-0.3
3,336,678	+	yrbE	b3194	0.24	-0.8
3,336,711	+	yrbE	b3194	0.28	-0.0
3,336,711	+	yrbE	b3194	0.28	+1.2
3,336,736	+	yrbE	b3194	0.32	+1.0
3,336,773	-	yrbE	b3194	0.36	+0.4
3,336,800	-	yrbE	b3194	0.40	+0.3
3,336,804	+	yrbE	b3194	0.40	+0.5
3,336,810	+	yrbE	b3194	0.41	+1.7
3,336,822	+	yrbE	b3194	0.43	+0.2
3,336,827	+	yrbE	b3194	0.43	+0.5
3,336,853	+	yrbE	b3194	0.47	-0.1
3,336,879	+	yrbE	b3194	0.50	+1.0
3,336,879	+	yrbE	b3194	0.50	-0.1
3,336,887	-	yrbE	b3194	0.51	+0.7
3,336,894	+	yrbE	b3194	0.52	+1.9
3,336,894	+	yrbE	b3194	0.52	+1.2
3,336,902	+	yrbE	b3194	0.53	+0.6
3,336,902	+	yrbE	b3194	0.53	+0.4
3,336,910	-	yrbE	b3194	0.54	+0.2
3,336,910	-	yrbE	b3194	0.54	+0.8
3,336,926	+	yrbE	b3194	0.56	+0.4
3,336,951	-	yrbE	b3194	0.59	+1.0
3,336,951	-	yrbE	b3194	0.59	+1.4
3,337,024	+	yrbE	b3194	0.68	+1.4
3,337,024	+	yrbE	b3194	0.68	-0.6
3,337,047	-	yrbE	b3194	0.71	-0.1
3,337,047	-	yrbE	b3194	0.71	+0.7
3,337,050	+	yrbE	b3194	0.72	+1.3
3,337,057	+	yrbE	b3194	0.73	+0.6
3,337,057	+	yrbE	b3194	0.73	-0.2
3,337,066	-	yrbE	b3194	0.74	+0.7
3,337,066	-	yrbE	b3194	0.74	+1.0
3,337,067	-	yrbE	b3194	0.74	+1.1
3,337,119	+	yrbE	b3194	0.81	+0.1
3,337,141	+	yrbE	b3194	0.83	+0.4
3,337,153	-	yrbE	b3194	0.85	+0.6
3,337,170	+	yrbE	b3194	0.87	+0.7
3,337,187	+	yrbE	b3194	0.89	+0.6
3,337,200	-				+0.3
3,337,257	+				+0.1
3,337,265	+				-0.1
3,337,265	+				-0.5
3,337,271	+				+0.2
3,337,281	+				+2.3
3,337,294	+				+0.0
3,337,328	+				+0.8
3,337,331	+				+0.3
3,337,331	+				+2.3
3,337,334	-				+0.5
3,337,334	-				+0.5
3,337,334	-				+0.9
3,337,343	+				+0.3
3,337,351	-				-0.5
3,337,351	-				+0.9
3,337,397	+	yrbF	b3195	0.15	+1.1
3,337,398	-	yrbF	b3195	0.15	-0.4
3,337,402	+	yrbF	b3195	0.15	+0.9
3,337,448	+	yrbF	b3195	0.21	+1.0
3,337,448	+	yrbF	b3195	0.21	+1.4
3,337,458	+	yrbF	b3195	0.22	-0.4
3,337,475	-	yrbF	b3195	0.24	+1.0