Strain Fitness in Escherichia coli BW25113 around b2897
Experiment: Cholinium glutamate 10 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cholinium glutamate 10 vol% |
---|---|---|---|---|---|
remove | |||||
3,037,900 | + | -0.7 | |||
3,037,900 | + | +0.5 | |||
3,037,986 | - | fldB | b2895 | 0.21 | -0.8 |
3,038,097 | + | fldB | b2895 | 0.42 | +0.6 |
3,038,128 | + | fldB | b2895 | 0.48 | +0.8 |
3,038,128 | + | fldB | b2895 | 0.48 | +0.3 |
3,038,128 | + | fldB | b2895 | 0.48 | +0.4 |
3,038,149 | + | fldB | b2895 | 0.52 | -1.7 |
3,038,149 | + | fldB | b2895 | 0.52 | +0.1 |
3,038,321 | + | fldB | b2895 | 0.85 | -0.6 |
3,038,348 | - | +0.4 | |||
3,038,348 | - | -0.9 | |||
3,038,418 | - | +0.0 | |||
3,038,516 | - | ygfX | b2896 | 0.19 | -0.1 |
3,038,698 | - | ygfX | b2896 | 0.64 | -0.0 |
3,038,714 | + | ygfX | b2896 | 0.68 | -0.7 |
3,038,714 | + | ygfX | b2896 | 0.68 | -0.6 |
3,038,716 | - | ygfX | b2896 | 0.68 | -0.4 |
3,038,718 | + | ygfX | b2896 | 0.69 | +0.2 |
3,038,718 | + | ygfX | b2896 | 0.69 | +0.2 |
3,038,746 | - | ygfX | b2896 | 0.75 | +0.3 |
3,038,776 | + | ygfX | b2896 | 0.83 | +0.8 |
3,038,785 | - | ygfX | b2896 | 0.85 | -0.0 |
3,038,785 | - | ygfX | b2896 | 0.85 | +0.6 |
3,038,869 | + | ygfY | b2897 | 0.16 | +0.6 |
3,038,877 | - | ygfY | b2897 | 0.19 | +0.6 |
3,038,877 | - | ygfY | b2897 | 0.19 | +1.4 |
3,038,992 | - | ygfY | b2897 | 0.62 | +1.2 |
3,039,002 | - | ygfY | b2897 | 0.66 | +0.9 |
3,039,028 | + | ygfY | b2897 | 0.76 | +0.8 |
3,039,170 | - | -0.0 | |||
3,039,170 | - | -0.2 | |||
3,039,251 | - | +0.3 | |||
3,039,251 | - | -0.4 | |||
3,039,255 | - | -0.0 | |||
3,039,298 | + | +0.6 | |||
3,039,320 | + | +0.2 | |||
3,039,320 | + | -1.3 | |||
3,039,328 | - | +0.3 | |||
3,039,379 | - | +2.6 |
Or see this region's nucleotide sequence