Strain Fitness in Escherichia coli BW25113 around b2424

Experiment: Cholinium glutamate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysA and cysW overlap by 11 nucleotidescysW and cysU overlap by 1 nucleotidescysU and cysP overlap by 1 nucleotides b2422: cysA - sulfate/thiosulfate transporter subunit (NCBI), at 2,537,739 to 2,538,836 cysA b2423: cysW - sulfate/thiosulfate transporter subunit (NCBI), at 2,538,826 to 2,539,701 cysW b2424: cysU - sulfate/thiosulfate transporter subunit (NCBI), at 2,539,701 to 2,540,534 cysU b2425: cysP - thiosulfate transporter subunit (NCBI), at 2,540,534 to 2,541,550 cysP Position (kb) 2539 2540 2541Strain fitness (log2 ratio) -2 -1 0 1 2at 2538.824 kb on + strandat 2538.824 kb on + strandat 2538.846 kb on - strandat 2538.846 kb on - strandat 2538.952 kb on + strand, within cysWat 2538.952 kb on + strand, within cysWat 2538.959 kb on + strand, within cysWat 2538.961 kb on + strand, within cysWat 2538.986 kb on + strand, within cysWat 2539.072 kb on + strand, within cysWat 2539.173 kb on + strand, within cysWat 2539.173 kb on + strand, within cysWat 2539.240 kb on + strand, within cysWat 2539.249 kb on - strand, within cysWat 2539.249 kb on - strand, within cysWat 2539.456 kb on + strand, within cysWat 2539.468 kb on - strand, within cysWat 2539.468 kb on - strand, within cysWat 2539.468 kb on - strand, within cysWat 2539.694 kb on - strandat 2540.062 kb on + strand, within cysUat 2540.110 kb on - strand, within cysUat 2540.110 kb on - strand, within cysUat 2540.129 kb on + strand, within cysUat 2540.492 kb on + strandat 2540.535 kb on + strandat 2540.563 kb on - strandat 2540.677 kb on - strand, within cysPat 2540.677 kb on - strand, within cysPat 2540.695 kb on - strand, within cysPat 2540.752 kb on - strand, within cysPat 2540.816 kb on - strand, within cysPat 2540.858 kb on + strand, within cysPat 2540.872 kb on + strand, within cysPat 2541.064 kb on + strand, within cysPat 2541.066 kb on + strand, within cysPat 2541.077 kb on - strand, within cysPat 2541.159 kb on + strand, within cysPat 2541.181 kb on - strand, within cysPat 2541.194 kb on + strand, within cysPat 2541.229 kb on - strand, within cysPat 2541.421 kb on - strand, within cysP

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium glutamate 10 vol%
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2,538,824 + -1.5
2,538,824 + +0.1
2,538,846 - +0.2
2,538,846 - +0.4
2,538,952 + cysW b2423 0.14 -1.5
2,538,952 + cysW b2423 0.14 -0.9
2,538,959 + cysW b2423 0.15 -0.6
2,538,961 + cysW b2423 0.15 -0.2
2,538,986 + cysW b2423 0.18 +0.8
2,539,072 + cysW b2423 0.28 -0.1
2,539,173 + cysW b2423 0.40 +0.0
2,539,173 + cysW b2423 0.40 -0.8
2,539,240 + cysW b2423 0.47 +0.3
2,539,249 - cysW b2423 0.48 -1.9
2,539,249 - cysW b2423 0.48 -0.8
2,539,456 + cysW b2423 0.72 -0.6
2,539,468 - cysW b2423 0.73 -0.9
2,539,468 - cysW b2423 0.73 -0.6
2,539,468 - cysW b2423 0.73 -0.6
2,539,694 - +0.7
2,540,062 + cysU b2424 0.43 +1.8
2,540,110 - cysU b2424 0.49 -0.1
2,540,110 - cysU b2424 0.49 +0.0
2,540,129 + cysU b2424 0.51 +0.1
2,540,492 + +0.7
2,540,535 + +0.2
2,540,563 - -0.8
2,540,677 - cysP b2425 0.14 -0.4
2,540,677 - cysP b2425 0.14 +1.1
2,540,695 - cysP b2425 0.16 +0.4
2,540,752 - cysP b2425 0.21 +0.6
2,540,816 - cysP b2425 0.28 -0.2
2,540,858 + cysP b2425 0.32 +0.1
2,540,872 + cysP b2425 0.33 +0.6
2,541,064 + cysP b2425 0.52 -0.1
2,541,066 + cysP b2425 0.52 +0.6
2,541,077 - cysP b2425 0.53 +0.1
2,541,159 + cysP b2425 0.61 +0.2
2,541,181 - cysP b2425 0.64 -0.1
2,541,194 + cysP b2425 0.65 -0.7
2,541,229 - cysP b2425 0.68 -0.6
2,541,421 - cysP b2425 0.87 +0.5

Or see this region's nucleotide sequence