Strain Fitness in Escherichia coli BW25113 around b1085
Experiment: Cholinium glutamate 10 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cholinium glutamate 10 vol% |
---|---|---|---|---|---|
remove | |||||
1,143,725 | - | -0.2 | |||
1,143,731 | - | +0.4 | |||
1,143,821 | - | b1085 | b1085 | 0.30 | -0.1 |
1,143,969 | - | b1085 | b1085 | 0.76 | +0.6 |
1,143,969 | - | b1085 | b1085 | 0.76 | +1.5 |
1,144,032 | - | -0.3 | |||
1,144,039 | + | +0.0 | |||
1,144,083 | + | +0.2 | |||
1,144,109 | - | -0.3 | |||
1,144,145 | - | +0.1 | |||
1,144,295 | + | rluC | b1086 | 0.14 | -0.9 |
1,144,438 | - | rluC | b1086 | 0.29 | -1.7 |
1,144,509 | - | rluC | b1086 | 0.36 | +0.3 |
1,144,575 | - | rluC | b1086 | 0.43 | -0.1 |
1,144,592 | + | rluC | b1086 | 0.45 | +0.4 |
1,144,610 | - | rluC | b1086 | 0.47 | -0.2 |
1,144,655 | + | rluC | b1086 | 0.51 | -0.8 |
1,144,655 | + | rluC | b1086 | 0.51 | +0.2 |
1,144,699 | + | rluC | b1086 | 0.56 | -0.8 |
1,144,699 | + | rluC | b1086 | 0.56 | +0.0 |
1,144,867 | + | rluC | b1086 | 0.73 | +0.3 |
1,144,867 | + | rluC | b1086 | 0.73 | -0.8 |
1,144,899 | + | rluC | b1086 | 0.77 | -0.1 |
1,144,988 | + | rluC | b1086 | 0.86 | +0.5 |
1,144,988 | + | rluC | b1086 | 0.86 | -1.2 |
1,144,998 | + | rluC | b1086 | 0.87 | +0.7 |
1,144,998 | + | rluC | b1086 | 0.87 | -0.3 |
1,145,011 | - | rluC | b1086 | 0.88 | +1.0 |
1,145,011 | - | rluC | b1086 | 0.88 | +2.0 |
1,145,035 | + | -0.3 |
Or see this region's nucleotide sequence