Experiment: Cholinium phosphate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhE and ybhD are separated by 40 nucleotides ybhD and ybhH are separated by 183 nucleotides
b0767: ybhE - 6-phosphogluconolactonase (NCBI), at 797,809 to 798,804
ybhE
b0768: ybhD - predicted DNA-binding transcriptional regulator (RefSeq), at 798,845 to 799,798
ybhD
b0769: ybhH - hypothetical protein (NCBI), at 799,982 to 801,034
ybhH
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2 at 797.960 kb on + strand, within ybhE at 798.019 kb on + strand, within ybhE at 798.080 kb on + strand, within ybhE at 798.105 kb on - strand, within ybhE at 798.134 kb on - strand at 798.207 kb on + strand, within ybhE at 798.207 kb on + strand, within ybhE at 798.414 kb on - strand, within ybhE at 798.414 kb on - strand, within ybhE at 798.502 kb on + strand, within ybhE at 798.510 kb on - strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.660 kb on - strand at 798.736 kb on - strand at 798.860 kb on - strand at 798.860 kb on - strand at 799.113 kb on - strand, within ybhD at 799.113 kb on - strand, within ybhD at 799.171 kb on + strand, within ybhD at 799.191 kb on + strand, within ybhD at 799.191 kb on + strand, within ybhD at 799.297 kb on - strand, within ybhD at 799.301 kb on - strand, within ybhD at 799.301 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.315 kb on + strand, within ybhD at 799.323 kb on - strand, within ybhD at 799.362 kb on - strand, within ybhD at 799.384 kb on + strand, within ybhD at 799.435 kb on + strand, within ybhD at 799.437 kb on + strand, within ybhD at 799.442 kb on - strand, within ybhD at 799.652 kb on + strand, within ybhD at 799.910 kb on - strand at 800.003 kb on - strand at 800.003 kb on - strand at 800.014 kb on - strand at 800.018 kb on + strand at 800.021 kb on - strand at 800.026 kb on - strand at 800.026 kb on - strand at 800.026 kb on - strand at 800.040 kb on - strand at 800.040 kb on - strand at 800.043 kb on - strand at 800.061 kb on + strand at 800.112 kb on - strand, within ybhH at 800.139 kb on + strand, within ybhH at 800.147 kb on - strand, within ybhH at 800.147 kb on - strand, within ybhH at 800.151 kb on + strand, within ybhH at 800.159 kb on - strand, within ybhH at 800.170 kb on - strand, within ybhH at 800.175 kb on + strand, within ybhH at 800.203 kb on - strand, within ybhH at 800.207 kb on - strand, within ybhH at 800.233 kb on + strand, within ybhH at 800.233 kb on + strand, within ybhH at 800.234 kb on - strand, within ybhH at 800.239 kb on + strand, within ybhH at 800.239 kb on + strand, within ybhH at 800.241 kb on - strand, within ybhH at 800.241 kb on - strand, within ybhH at 800.250 kb on + strand, within ybhH at 800.250 kb on + strand, within ybhH at 800.257 kb on - strand, within ybhH at 800.280 kb on - strand, within ybhH at 800.280 kb on - strand, within ybhH at 800.336 kb on - strand, within ybhH at 800.336 kb on - strand, within ybhH at 800.345 kb on + strand, within ybhH at 800.360 kb on + strand, within ybhH at 800.379 kb on + strand, within ybhH at 800.407 kb on + strand, within ybhH at 800.412 kb on + strand, within ybhH at 800.412 kb on + strand, within ybhH at 800.426 kb on + strand, within ybhH at 800.426 kb on + strand, within ybhH at 800.437 kb on + strand, within ybhH at 800.445 kb on + strand, within ybhH at 800.445 kb on + strand, within ybhH at 800.451 kb on + strand, within ybhH at 800.454 kb on + strand, within ybhH at 800.513 kb on + strand, within ybhH at 800.540 kb on + strand, within ybhH at 800.540 kb on + strand, within ybhH at 800.543 kb on + strand, within ybhH at 800.548 kb on + strand, within ybhH at 800.550 kb on + strand, within ybhH at 800.550 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.556 kb on - strand, within ybhH at 800.558 kb on + strand, within ybhH at 800.558 kb on + strand, within ybhH at 800.563 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.683 kb on + strand, within ybhH at 800.696 kb on + strand, within ybhH
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium phosphate 10 vol% remove 797,960 + ybhE b0767 0.15 -0.6 798,019 + ybhE b0767 0.21 -0.3 798,080 + ybhE b0767 0.27 +0.8 798,105 - ybhE b0767 0.30 -0.5 798,134 - -0.3 798,207 + ybhE b0767 0.40 +0.2 798,207 + ybhE b0767 0.40 -0.7 798,414 - ybhE b0767 0.61 -2.5 798,414 - ybhE b0767 0.61 +0.2 798,502 + ybhE b0767 0.70 -0.1 798,510 - ybhE b0767 0.70 +0.2 798,533 + ybhE b0767 0.73 -0.9 798,533 + ybhE b0767 0.73 +0.3 798,533 + ybhE b0767 0.73 -1.1 798,660 - +0.2 798,736 - -0.2 798,860 - +0.3 798,860 - +0.3 799,113 - ybhD b0768 0.28 -0.5 799,113 - ybhD b0768 0.28 +1.1 799,171 + ybhD b0768 0.34 -0.5 799,191 + ybhD b0768 0.36 -0.4 799,191 + ybhD b0768 0.36 +0.1 799,297 - ybhD b0768 0.47 +0.5 799,301 - ybhD b0768 0.48 +0.0 799,301 - ybhD b0768 0.48 +0.9 799,313 - ybhD b0768 0.49 -0.3 799,313 - ybhD b0768 0.49 -1.0 799,313 - ybhD b0768 0.49 +0.3 799,315 + ybhD b0768 0.49 -0.1 799,323 - ybhD b0768 0.50 -1.0 799,362 - ybhD b0768 0.54 +2.2 799,384 + ybhD b0768 0.56 +0.1 799,435 + ybhD b0768 0.62 -0.2 799,437 + ybhD b0768 0.62 +1.6 799,442 - ybhD b0768 0.63 +1.2 799,652 + ybhD b0768 0.85 +1.2 799,910 - +1.2 800,003 - -0.7 800,003 - -0.8 800,014 - -0.4 800,018 + +1.2 800,021 - -0.3 800,026 - +0.6 800,026 - +1.2 800,026 - +0.7 800,040 - +1.2 800,040 - +0.7 800,043 - +1.2 800,061 + +1.2 800,112 - ybhH b0769 0.12 -0.3 800,139 + ybhH b0769 0.15 +1.2 800,147 - ybhH b0769 0.16 -0.3 800,147 - ybhH b0769 0.16 +1.2 800,151 + ybhH b0769 0.16 -0.3 800,159 - ybhH b0769 0.17 +1.2 800,170 - ybhH b0769 0.18 +0.8 800,175 + ybhH b0769 0.18 +1.2 800,203 - ybhH b0769 0.21 -1.1 800,207 - ybhH b0769 0.21 +0.4 800,233 + ybhH b0769 0.24 +0.8 800,233 + ybhH b0769 0.24 +1.2 800,234 - ybhH b0769 0.24 +0.6 800,239 + ybhH b0769 0.24 +0.7 800,239 + ybhH b0769 0.24 -0.3 800,241 - ybhH b0769 0.25 +0.2 800,241 - ybhH b0769 0.25 -1.9 800,250 + ybhH b0769 0.25 -0.2 800,250 + ybhH b0769 0.25 +1.6 800,257 - ybhH b0769 0.26 -0.3 800,280 - ybhH b0769 0.28 +1.8 800,280 - ybhH b0769 0.28 +1.3 800,336 - ybhH b0769 0.34 -1.1 800,336 - ybhH b0769 0.34 -0.1 800,345 + ybhH b0769 0.34 -0.2 800,360 + ybhH b0769 0.36 +0.0 800,379 + ybhH b0769 0.38 -0.3 800,407 + ybhH b0769 0.40 +0.0 800,412 + ybhH b0769 0.41 -1.3 800,412 + ybhH b0769 0.41 +1.2 800,426 + ybhH b0769 0.42 -0.8 800,426 + ybhH b0769 0.42 +0.2 800,437 + ybhH b0769 0.43 +0.2 800,445 + ybhH b0769 0.44 +0.4 800,445 + ybhH b0769 0.44 +1.7 800,451 + ybhH b0769 0.45 -1.0 800,454 + ybhH b0769 0.45 +0.5 800,513 + ybhH b0769 0.50 +0.2 800,540 + ybhH b0769 0.53 +1.9 800,540 + ybhH b0769 0.53 +0.3 800,543 + ybhH b0769 0.53 +0.1 800,548 + ybhH b0769 0.54 +0.5 800,550 + ybhH b0769 0.54 +1.2 800,550 + ybhH b0769 0.54 +1.6 800,553 + ybhH b0769 0.54 -0.1 800,553 + ybhH b0769 0.54 +0.4 800,553 + ybhH b0769 0.54 +0.7 800,553 + ybhH b0769 0.54 +0.5 800,556 - ybhH b0769 0.55 +1.2 800,558 + ybhH b0769 0.55 -0.1 800,558 + ybhH b0769 0.55 +0.4 800,563 + ybhH b0769 0.55 +0.2 800,673 + ybhH b0769 0.66 +0.5 800,673 + ybhH b0769 0.66 +0.2 800,673 + ybhH b0769 0.66 +0.9 800,673 + ybhH b0769 0.66 -0.6 800,673 + ybhH b0769 0.66 -1.1 800,673 + ybhH b0769 0.66 -0.0 800,673 + ybhH b0769 0.66 +0.4 800,673 + ybhH b0769 0.66 +0.2 800,673 + ybhH b0769 0.66 +1.2 800,681 - ybhH b0769 0.66 +1.2 800,681 - ybhH b0769 0.66 +1.2 800,681 - ybhH b0769 0.66 +1.2 800,683 + ybhH b0769 0.67 +0.5 800,696 + ybhH b0769 0.68 +0.3
Or see this region's nucleotide sequence