Strain Fitness in Escherichia coli BW25113 around b1989
Experiment: e-Amino-N-Caproic Acid 10 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | e-Amino-N-Caproic Acid 10 vol% |
---|---|---|---|---|---|
remove | |||||
2,059,402 | + | nac | b1988 | 0.39 | +0.2 |
2,059,487 | + | nac | b1988 | 0.49 | -0.1 |
2,059,541 | - | nac | b1988 | 0.55 | +0.1 |
2,059,584 | + | nac | b1988 | 0.59 | -0.2 |
2,059,584 | + | nac | b1988 | 0.59 | -0.9 |
2,059,643 | + | nac | b1988 | 0.66 | +0.9 |
2,059,714 | - | nac | b1988 | 0.73 | -0.4 |
2,059,896 | + | +0.9 | |||
2,060,029 | + | -0.3 | |||
2,060,165 | + | -0.4 | |||
2,060,263 | - | +0.9 | |||
2,060,346 | + | asnV | b1989 | 0.82 | +0.4 |
2,060,520 | + | erfK | b1990 | 0.11 | +0.3 |
2,060,520 | + | erfK | b1990 | 0.11 | +0.0 |
2,060,530 | - | erfK | b1990 | 0.12 | +1.1 |
2,060,536 | + | erfK | b1990 | 0.13 | -0.4 |
2,060,573 | + | erfK | b1990 | 0.17 | +0.4 |
2,060,610 | - | erfK | b1990 | 0.21 | -0.3 |
2,060,630 | - | erfK | b1990 | 0.23 | +0.3 |
2,060,630 | - | erfK | b1990 | 0.23 | -0.0 |
2,060,715 | + | erfK | b1990 | 0.32 | +0.3 |
2,060,730 | + | erfK | b1990 | 0.34 | -0.5 |
2,060,730 | - | erfK | b1990 | 0.34 | -0.3 |
2,060,743 | - | erfK | b1990 | 0.35 | +0.7 |
2,060,743 | - | erfK | b1990 | 0.35 | +0.1 |
2,060,821 | - | erfK | b1990 | 0.44 | -0.6 |
2,060,976 | - | erfK | b1990 | 0.60 | +1.2 |
2,060,976 | - | erfK | b1990 | 0.60 | +0.6 |
2,060,983 | + | erfK | b1990 | 0.61 | -0.6 |
2,060,989 | - | erfK | b1990 | 0.62 | +0.2 |
2,061,007 | - | erfK | b1990 | 0.63 | +0.0 |
2,061,078 | - | erfK | b1990 | 0.71 | -0.3 |
2,061,200 | - | erfK | b1990 | 0.84 | -0.1 |
2,061,211 | - | erfK | b1990 | 0.85 | +0.4 |
2,061,216 | - | erfK | b1990 | 0.86 | -0.5 |
Or see this region's nucleotide sequence