Strain Fitness in Escherichia coli BW25113 around b1989

Experiment: e-Amino-N-Caproic Acid 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnac and asnV are separated by 326 nucleotidesasnV and erfK are separated by 55 nucleotides b1988: nac - DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI), at 2,059,040 to 2,059,957 nac b1989: asnV - tRNA-Asn (NCBI), at 2,060,284 to 2,060,359 asnV b1990: erfK - conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI), at 2,060,415 to 2,061,347 erfK Position (kb) 2060 2061Strain fitness (log2 ratio) -1 0 1at 2059.402 kb on + strand, within nacat 2059.487 kb on + strand, within nacat 2059.541 kb on - strand, within nacat 2059.584 kb on + strand, within nacat 2059.584 kb on + strand, within nacat 2059.643 kb on + strand, within nacat 2059.714 kb on - strand, within nacat 2059.896 kb on + strandat 2060.029 kb on + strandat 2060.165 kb on + strandat 2060.263 kb on - strandat 2060.346 kb on + strand, within asnVat 2060.520 kb on + strand, within erfKat 2060.520 kb on + strand, within erfKat 2060.530 kb on - strand, within erfKat 2060.536 kb on + strand, within erfKat 2060.573 kb on + strand, within erfKat 2060.610 kb on - strand, within erfKat 2060.630 kb on - strand, within erfKat 2060.630 kb on - strand, within erfKat 2060.715 kb on + strand, within erfKat 2060.730 kb on + strand, within erfKat 2060.730 kb on - strand, within erfKat 2060.743 kb on - strand, within erfKat 2060.743 kb on - strand, within erfKat 2060.821 kb on - strand, within erfKat 2060.976 kb on - strand, within erfKat 2060.976 kb on - strand, within erfKat 2060.983 kb on + strand, within erfKat 2060.989 kb on - strand, within erfKat 2061.007 kb on - strand, within erfKat 2061.078 kb on - strand, within erfKat 2061.200 kb on - strand, within erfKat 2061.211 kb on - strand, within erfKat 2061.216 kb on - strand, within erfK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction e-Amino-N-Caproic Acid 10 vol%
remove
2,059,402 + nac b1988 0.39 +0.2
2,059,487 + nac b1988 0.49 -0.1
2,059,541 - nac b1988 0.55 +0.1
2,059,584 + nac b1988 0.59 -0.2
2,059,584 + nac b1988 0.59 -0.9
2,059,643 + nac b1988 0.66 +0.9
2,059,714 - nac b1988 0.73 -0.4
2,059,896 + +0.9
2,060,029 + -0.3
2,060,165 + -0.4
2,060,263 - +0.9
2,060,346 + asnV b1989 0.82 +0.4
2,060,520 + erfK b1990 0.11 +0.3
2,060,520 + erfK b1990 0.11 +0.0
2,060,530 - erfK b1990 0.12 +1.1
2,060,536 + erfK b1990 0.13 -0.4
2,060,573 + erfK b1990 0.17 +0.4
2,060,610 - erfK b1990 0.21 -0.3
2,060,630 - erfK b1990 0.23 +0.3
2,060,630 - erfK b1990 0.23 -0.0
2,060,715 + erfK b1990 0.32 +0.3
2,060,730 + erfK b1990 0.34 -0.5
2,060,730 - erfK b1990 0.34 -0.3
2,060,743 - erfK b1990 0.35 +0.7
2,060,743 - erfK b1990 0.35 +0.1
2,060,821 - erfK b1990 0.44 -0.6
2,060,976 - erfK b1990 0.60 +1.2
2,060,976 - erfK b1990 0.60 +0.6
2,060,983 + erfK b1990 0.61 -0.6
2,060,989 - erfK b1990 0.62 +0.2
2,061,007 - erfK b1990 0.63 +0.0
2,061,078 - erfK b1990 0.71 -0.3
2,061,200 - erfK b1990 0.84 -0.1
2,061,211 - erfK b1990 0.85 +0.4
2,061,216 - erfK b1990 0.86 -0.5

Or see this region's nucleotide sequence