Strain Fitness in Escherichia coli BW25113 around b1693
Experiment: 3-methyl-1-butanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
1,771,859 | - | +1.9 | |||
1,771,864 | - | +0.9 | |||
1,771,927 | - | ydiB | b1692 | 0.13 | -1.1 |
1,771,950 | - | ydiB | b1692 | 0.16 | +0.9 |
1,771,957 | - | ydiB | b1692 | 0.17 | +0.9 |
1,771,957 | - | ydiB | b1692 | 0.17 | +0.9 |
1,771,964 | - | ydiB | b1692 | 0.17 | +0.9 |
1,772,008 | - | ydiB | b1692 | 0.22 | +0.9 |
1,772,113 | + | ydiB | b1692 | 0.35 | -0.7 |
1,772,113 | + | ydiB | b1692 | 0.35 | +1.2 |
1,772,121 | + | ydiB | b1692 | 0.36 | -0.6 |
1,772,148 | - | ydiB | b1692 | 0.39 | +1.5 |
1,772,163 | - | ydiB | b1692 | 0.40 | -0.1 |
1,772,207 | - | ydiB | b1692 | 0.45 | -0.4 |
1,772,207 | - | ydiB | b1692 | 0.45 | -0.4 |
1,772,610 | - | +0.6 | |||
1,772,623 | - | -1.7 | |||
1,772,623 | - | -0.1 | |||
1,772,882 | - | aroD | b1693 | 0.23 | -2.5 |
1,772,959 | + | aroD | b1693 | 0.33 | -0.8 |
1,772,959 | + | aroD | b1693 | 0.33 | -0.4 |
1,773,012 | - | aroD | b1693 | 0.40 | +0.9 |
1,773,094 | + | aroD | b1693 | 0.51 | -1.5 |
1,773,094 | + | aroD | b1693 | 0.51 | +0.2 |
1,773,181 | - | aroD | b1693 | 0.62 | +0.8 |
1,773,181 | - | aroD | b1693 | 0.62 | -0.5 |
1,773,228 | - | aroD | b1693 | 0.68 | +0.9 |
1,773,239 | + | aroD | b1693 | 0.70 | -0.3 |
1,773,247 | - | aroD | b1693 | 0.71 | +2.5 |
1,773,247 | - | aroD | b1693 | 0.71 | +0.7 |
1,773,271 | + | aroD | b1693 | 0.74 | -1.2 |
1,773,272 | + | aroD | b1693 | 0.74 | -0.5 |
1,773,279 | - | aroD | b1693 | 0.75 | +0.9 |
1,773,291 | + | aroD | b1693 | 0.77 | -0.5 |
1,773,440 | + | +0.1 | |||
1,773,440 | + | -1.2 | |||
1,773,442 | + | -0.2 | |||
1,773,442 | + | -0.5 | |||
1,773,641 | - | +0.9 | |||
1,773,665 | - | +0.9 | |||
1,773,973 | + | ydiF | b1694 | 0.23 | +0.9 |
1,773,983 | - | ydiF | b1694 | 0.23 | -0.1 |
1,774,006 | + | ydiF | b1694 | 0.25 | +0.9 |
1,774,006 | + | ydiF | b1694 | 0.25 | -0.1 |
1,774,006 | + | ydiF | b1694 | 0.25 | +1.7 |
1,774,013 | - | ydiF | b1694 | 0.25 | -0.1 |
1,774,014 | - | ydiF | b1694 | 0.25 | -0.1 |
1,774,086 | + | ydiF | b1694 | 0.30 | +0.9 |
1,774,089 | - | ydiF | b1694 | 0.30 | +0.9 |
1,774,095 | + | ydiF | b1694 | 0.30 | -0.1 |
1,774,138 | - | ydiF | b1694 | 0.33 | +2.5 |
1,774,157 | - | ydiF | b1694 | 0.34 | -0.5 |
1,774,182 | - | ydiF | b1694 | 0.36 | +0.4 |
1,774,196 | - | ydiF | b1694 | 0.37 | +0.9 |
1,774,239 | - | ydiF | b1694 | 0.39 | -0.4 |
1,774,251 | - | ydiF | b1694 | 0.40 | +1.8 |
1,774,261 | - | ydiF | b1694 | 0.41 | -0.4 |
1,774,368 | + | ydiF | b1694 | 0.47 | -1.9 |
1,774,392 | - | ydiF | b1694 | 0.49 | -1.2 |
1,774,449 | + | ydiF | b1694 | 0.53 | -0.3 |
1,774,459 | + | ydiF | b1694 | 0.53 | -0.1 |
Or see this region's nucleotide sequence