Strain Fitness in Escherichia coli BW25113 around b2324
Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1-Pentanol 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
2,439,701 | - | +2.7 | |||
2,439,733 | + | +0.4 | |||
2,439,733 | + | +0.0 | |||
2,439,741 | - | +0.1 | |||
2,439,765 | + | +0.1 | |||
2,439,765 | + | +0.7 | |||
2,439,799 | + | -0.3 | |||
2,439,933 | - | +0.3 | |||
2,439,991 | - | b2324 | b2324 | 0.10 | +0.6 |
2,440,001 | - | b2324 | b2324 | 0.11 | -0.0 |
2,440,001 | - | b2324 | b2324 | 0.11 | +1.3 |
2,440,172 | + | b2324 | b2324 | 0.19 | +0.5 |
2,440,172 | + | b2324 | b2324 | 0.19 | +0.7 |
2,440,185 | - | b2324 | b2324 | 0.20 | -0.8 |
2,440,251 | - | b2324 | b2324 | 0.23 | +0.1 |
2,440,535 | + | b2324 | b2324 | 0.37 | -0.5 |
2,440,535 | + | b2324 | b2324 | 0.37 | +0.5 |
2,440,551 | + | b2324 | b2324 | 0.38 | +0.4 |
2,440,686 | - | b2324 | b2324 | 0.45 | +0.1 |
2,440,688 | + | b2324 | b2324 | 0.45 | +1.0 |
2,440,946 | + | b2324 | b2324 | 0.58 | +0.7 |
2,440,993 | + | b2324 | b2324 | 0.60 | +0.3 |
2,441,008 | + | b2324 | b2324 | 0.61 | -2.5 |
2,441,008 | - | b2324 | b2324 | 0.61 | +1.3 |
2,441,008 | - | b2324 | b2324 | 0.61 | +0.6 |
2,441,139 | + | b2324 | b2324 | 0.67 | -0.3 |
2,441,147 | - | b2324 | b2324 | 0.68 | -0.0 |
2,441,199 | - | b2324 | b2324 | 0.70 | -2.6 |
2,441,199 | - | b2324 | b2324 | 0.70 | +0.3 |
2,441,329 | + | b2324 | b2324 | 0.77 | +1.8 |
2,441,458 | + | b2324 | b2324 | 0.83 | +0.2 |
2,441,471 | + | b2324 | b2324 | 0.84 | +0.2 |
2,441,618 | - | -1.0 | |||
2,441,625 | + | +0.0 | |||
2,441,625 | + | +0.6 | |||
2,441,751 | - | +0.6 | |||
2,441,839 | + | -0.4 | |||
2,441,883 | + | +0.3 | |||
2,441,904 | - | +0.1 | |||
2,441,966 | + | yfcL | b2325 | 0.19 | -0.2 |
2,441,966 | + | yfcL | b2325 | 0.19 | -0.5 |
2,442,015 | + | yfcL | b2325 | 0.37 | +0.3 |
2,442,015 | + | yfcL | b2325 | 0.37 | +0.6 |
2,442,033 | - | yfcL | b2325 | 0.43 | +0.0 |
2,442,050 | + | yfcL | b2325 | 0.49 | -0.3 |
2,442,050 | + | yfcL | b2325 | 0.49 | -0.0 |
2,442,200 | - | +0.8 | |||
2,442,221 | + | -0.6 | |||
2,442,316 | - | yfcM | b2326 | 0.17 | -0.5 |
2,442,343 | + | yfcM | b2326 | 0.21 | +0.4 |
2,442,357 | - | yfcM | b2326 | 0.24 | -0.4 |
2,442,440 | + | yfcM | b2326 | 0.39 | +0.0 |
2,442,522 | + | yfcM | b2326 | 0.54 | +0.2 |
2,442,583 | - | yfcM | b2326 | 0.65 | +0.0 |
2,442,647 | - | yfcM | b2326 | 0.77 | -0.5 |
2,442,647 | - | yfcM | b2326 | 0.77 | -0.6 |
2,442,696 | - | yfcM | b2326 | 0.86 | -0.1 |
2,442,758 | + | +0.7 | |||
2,442,758 | + | +0.2 | |||
2,442,758 | + | +0.4 | |||
2,442,766 | - | -0.8 | |||
2,442,766 | - | -0.6 | |||
2,442,766 | - | -0.5 | |||
2,442,766 | - | +0.4 | |||
2,442,777 | - | +0.2 |
Or see this region's nucleotide sequence