Strain Fitness in Escherichia coli BW25113 around b1754
Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 1-Pentanol 0.5 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 1,833,245 | + | ydjZ | b1752 | 0.58 | -0.3 |
| 1,833,394 | - | ydjZ | b1752 | 0.79 | +0.1 |
| 1,833,430 | - | ydjZ | b1752 | 0.84 | -0.6 |
| 1,833,789 | + | ynjA | b1753 | 0.46 | -0.3 |
| 1,833,789 | + | ynjA | b1753 | 0.46 | +0.4 |
| 1,834,210 | + | -0.2 | |||
| 1,834,332 | - | b1754 | b1754 | 0.20 | +0.8 |
| 1,834,427 | + | b1754 | b1754 | 0.28 | +0.9 |
| 1,834,893 | + | b1754 | b1754 | 0.68 | +0.2 |
| 1,835,210 | + | -0.0 | |||
| 1,835,210 | + | -1.0 | |||
| 1,835,245 | - | +0.4 | |||
| 1,835,495 | + | ynjC | b1755 | 0.17 | +0.4 |
| 1,835,643 | - | ynjC | b1755 | 0.26 | +0.3 |
| 1,835,649 | - | ynjC | b1755 | 0.27 | -0.1 |
| 1,835,682 | + | ynjC | b1755 | 0.29 | +0.1 |
| 1,835,896 | + | ynjC | b1755 | 0.43 | -0.1 |
| 1,835,896 | + | ynjC | b1755 | 0.43 | -0.2 |
| 1,835,982 | - | ynjC | b1755 | 0.49 | -0.8 |
| 1,835,982 | - | ynjC | b1755 | 0.49 | -0.1 |
| 1,836,212 | - | ynjC | b1755 | 0.64 | +0.3 |
Or see this region's nucleotide sequence