Strain Fitness in Escherichia coli BW25113 around b1605
Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1-Pentanol 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
1,676,770 | + | ydgH | b1604 | 0.34 | +0.3 |
1,676,818 | - | ydgH | b1604 | 0.39 | -1.4 |
1,676,938 | + | ydgH | b1604 | 0.52 | -0.1 |
1,676,953 | + | ydgH | b1604 | 0.53 | -1.1 |
1,677,045 | - | ydgH | b1604 | 0.63 | +0.2 |
1,677,184 | - | ydgH | b1604 | 0.78 | -0.5 |
1,677,329 | - | -0.2 | |||
1,677,329 | - | -0.9 | |||
1,677,791 | + | ydgI | b1605 | 0.15 | +0.5 |
1,677,952 | + | ydgI | b1605 | 0.27 | -0.2 |
1,678,025 | + | ydgI | b1605 | 0.32 | +0.3 |
1,678,025 | + | ydgI | b1605 | 0.32 | +0.5 |
1,678,025 | + | ydgI | b1605 | 0.32 | -1.4 |
1,678,148 | + | ydgI | b1605 | 0.41 | +1.1 |
1,678,154 | - | ydgI | b1605 | 0.41 | +0.1 |
1,678,295 | - | ydgI | b1605 | 0.52 | -1.1 |
1,678,353 | + | ydgI | b1605 | 0.56 | +0.2 |
1,678,353 | + | ydgI | b1605 | 0.56 | +0.2 |
1,678,422 | - | ydgI | b1605 | 0.61 | -0.7 |
1,678,477 | - | ydgI | b1605 | 0.65 | -0.8 |
1,678,873 | - | -0.2 | |||
1,678,883 | + | -1.8 | |||
1,678,883 | + | -0.1 | |||
1,678,919 | + | -0.5 | |||
1,679,076 | + | folM | b1606 | 0.11 | -1.0 |
1,679,076 | + | folM | b1606 | 0.11 | -0.1 |
1,679,126 | + | folM | b1606 | 0.17 | +0.2 |
1,679,126 | + | folM | b1606 | 0.17 | -0.8 |
1,679,165 | - | folM | b1606 | 0.23 | -0.4 |
1,679,165 | - | folM | b1606 | 0.23 | -0.6 |
1,679,198 | - | folM | b1606 | 0.27 | -0.1 |
1,679,226 | + | folM | b1606 | 0.31 | +0.6 |
1,679,328 | - | folM | b1606 | 0.45 | -0.8 |
1,679,336 | - | folM | b1606 | 0.46 | +0.5 |
1,679,342 | + | folM | b1606 | 0.47 | +0.6 |
1,679,342 | - | folM | b1606 | 0.47 | -0.6 |
1,679,342 | - | folM | b1606 | 0.47 | -0.2 |
1,679,342 | - | folM | b1606 | 0.47 | -0.1 |
1,679,349 | + | folM | b1606 | 0.48 | +1.9 |
1,679,376 | + | folM | b1606 | 0.52 | +0.0 |
1,679,390 | + | folM | b1606 | 0.54 | +0.6 |
1,679,484 | - | folM | b1606 | 0.67 | -0.0 |
1,679,538 | + | folM | b1606 | 0.74 | +1.0 |
1,679,538 | + | folM | b1606 | 0.74 | +0.6 |
1,679,887 | + | ydgC | b1607 | 0.50 | -1.0 |
1,679,897 | + | ydgC | b1607 | 0.53 | +0.2 |
1,679,924 | - | ydgC | b1607 | 0.61 | -0.1 |
Or see this region's nucleotide sequence