Strain Fitness in Escherichia coli BW25113 around b1004
Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1-Pentanol 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
1,065,339 | + | agp | b1002 | 0.43 | -0.3 |
1,065,578 | + | agp | b1002 | 0.62 | -0.5 |
1,065,620 | - | agp | b1002 | 0.65 | +0.2 |
1,065,634 | - | agp | b1002 | 0.67 | -2.4 |
1,065,634 | - | agp | b1002 | 0.67 | +0.5 |
1,065,655 | - | agp | b1002 | 0.68 | +0.8 |
1,065,692 | + | agp | b1002 | 0.71 | -0.0 |
1,065,699 | + | agp | b1002 | 0.72 | -0.1 |
1,065,750 | - | agp | b1002 | 0.76 | +0.2 |
1,065,750 | - | agp | b1002 | 0.76 | +0.3 |
1,065,803 | + | agp | b1002 | 0.80 | -0.0 |
1,065,846 | + | agp | b1002 | 0.84 | -0.8 |
1,065,899 | - | agp | b1002 | 0.88 | +0.1 |
1,065,901 | + | agp | b1002 | 0.88 | +0.1 |
1,065,901 | + | agp | b1002 | 0.88 | +0.5 |
1,065,936 | - | -0.5 | |||
1,065,983 | + | -0.3 | |||
1,066,079 | + | +0.5 | |||
1,066,415 | + | wrbA | b1004 | 0.13 | +0.2 |
1,066,460 | - | wrbA | b1004 | 0.21 | +0.4 |
1,066,550 | + | wrbA | b1004 | 0.36 | +0.2 |
1,066,550 | + | wrbA | b1004 | 0.36 | +1.1 |
1,066,562 | - | wrbA | b1004 | 0.38 | -0.2 |
1,066,562 | - | wrbA | b1004 | 0.38 | +0.8 |
1,066,563 | - | wrbA | b1004 | 0.38 | +0.1 |
1,066,630 | + | wrbA | b1004 | 0.49 | +0.5 |
1,066,651 | + | wrbA | b1004 | 0.53 | -0.2 |
1,066,821 | - | wrbA | b1004 | 0.81 | +0.6 |
1,066,849 | - | wrbA | b1004 | 0.86 | +0.9 |
1,066,911 | - | +0.7 | |||
1,066,947 | + | +0.1 | |||
1,066,951 | - | +0.2 | |||
1,067,176 | - | +0.3 | |||
1,067,203 | - | +0.1 | |||
1,067,203 | - | +0.4 | |||
1,067,205 | + | +0.3 | |||
1,067,212 | - | +0.3 | |||
1,067,214 | + | -0.2 | |||
1,067,214 | + | +0.3 | |||
1,067,214 | + | -0.1 | |||
1,067,214 | + | +0.2 | |||
1,067,254 | - | +1.9 | |||
1,067,254 | - | -0.2 | |||
1,067,254 | - | -0.6 | |||
1,067,254 | - | +1.2 | |||
1,067,254 | - | +1.2 | |||
1,067,279 | + | -0.6 | |||
1,067,302 | - | +0.4 | |||
1,067,589 | + | +0.4 | |||
1,067,833 | - | -0.5 | |||
1,067,883 | + | ycdG | b1006 | 0.11 | -0.0 |
1,067,922 | + | ycdG | b1006 | 0.14 | +1.0 |
Or see this region's nucleotide sequence