Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dmsA and dmsB are separated by 10 nucleotides dmsB and dmsC are separated by 1 nucleotides dmsC and ycaC are separated by 34 nucleotides
b0894: dmsA - anaerobic dimethyl sulfoxide reductase subunit A (VIMSS), at 940,182 to 942,626
dmsA
b0895: dmsB - dimethyl sulfoxide reductase, anaerobic, subunit B (NCBI), at 942,637 to 943,254
dmsB
b0896: dmsC - dimethyl sulfoxide reductase, anaerobic, subunit C (NCBI), at 943,256 to 944,119
dmsC
b0897: ycaC - predicted hydrolase (NCBI), at 944,154 to 944,780
ycaC
Position (kb) 942
943
944 Strain fitness (log2 ratio) -1
0
1 at 941.704 kb on - strand, within dmsA at 941.704 kb on - strand, within dmsA at 941.720 kb on - strand, within dmsA at 941.723 kb on + strand, within dmsA at 941.723 kb on + strand, within dmsA at 941.749 kb on + strand, within dmsA at 941.873 kb on - strand, within dmsA at 941.873 kb on - strand, within dmsA at 941.878 kb on + strand, within dmsA at 941.878 kb on + strand, within dmsA at 941.942 kb on + strand, within dmsA at 941.946 kb on - strand, within dmsA at 941.975 kb on - strand, within dmsA at 942.104 kb on + strand, within dmsA at 942.177 kb on - strand, within dmsA at 942.269 kb on + strand, within dmsA at 942.432 kb on + strand at 942.485 kb on + strand at 942.485 kb on + strand at 942.493 kb on - strand at 942.501 kb on - strand at 942.626 kb on - strand at 942.693 kb on - strand at 942.850 kb on + strand, within dmsB at 942.860 kb on + strand, within dmsB at 942.863 kb on - strand, within dmsB at 942.971 kb on - strand, within dmsB at 943.027 kb on - strand, within dmsB at 943.027 kb on - strand, within dmsB at 943.107 kb on - strand, within dmsB at 943.182 kb on + strand, within dmsB at 943.319 kb on - strand at 943.319 kb on - strand at 943.348 kb on + strand, within dmsC at 943.348 kb on + strand, within dmsC at 943.348 kb on + strand, within dmsC at 943.412 kb on - strand, within dmsC at 943.412 kb on - strand, within dmsC at 943.485 kb on + strand, within dmsC at 943.661 kb on + strand, within dmsC at 943.663 kb on + strand, within dmsC at 943.663 kb on - strand, within dmsC at 943.669 kb on - strand, within dmsC at 943.672 kb on + strand, within dmsC at 943.680 kb on - strand, within dmsC at 943.682 kb on + strand, within dmsC at 943.732 kb on + strand, within dmsC at 943.758 kb on + strand, within dmsC at 943.833 kb on - strand, within dmsC at 943.833 kb on - strand, within dmsC at 943.878 kb on - strand, within dmsC at 943.910 kb on - strand, within dmsC at 943.977 kb on - strand, within dmsC at 943.985 kb on - strand, within dmsC at 944.080 kb on - strand at 944.082 kb on + strand at 944.082 kb on + strand at 944.082 kb on - strand at 944.086 kb on + strand at 944.093 kb on + strand at 944.101 kb on - strand at 944.105 kb on + strand at 944.105 kb on + strand at 944.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.5 vol% remove 941,704 - dmsA b0894 0.62 +0.2 941,704 - dmsA b0894 0.62 +0.3 941,720 - dmsA b0894 0.63 -0.5 941,723 + dmsA b0894 0.63 -0.1 941,723 + dmsA b0894 0.63 -0.3 941,749 + dmsA b0894 0.64 +0.5 941,873 - dmsA b0894 0.69 +0.0 941,873 - dmsA b0894 0.69 -1.3 941,878 + dmsA b0894 0.69 +0.4 941,878 + dmsA b0894 0.69 +0.3 941,942 + dmsA b0894 0.72 -0.4 941,946 - dmsA b0894 0.72 +1.1 941,975 - dmsA b0894 0.73 -0.4 942,104 + dmsA b0894 0.79 +0.0 942,177 - dmsA b0894 0.82 -0.2 942,269 + dmsA b0894 0.85 +0.4 942,432 + +0.5 942,485 + +0.4 942,485 + +0.8 942,493 - +0.3 942,501 - +0.7 942,626 - -0.2 942,693 - +0.4 942,850 + dmsB b0895 0.34 +0.6 942,860 + dmsB b0895 0.36 -0.2 942,863 - dmsB b0895 0.37 +0.4 942,971 - dmsB b0895 0.54 -0.6 943,027 - dmsB b0895 0.63 +0.8 943,027 - dmsB b0895 0.63 +0.5 943,107 - dmsB b0895 0.76 -0.2 943,182 + dmsB b0895 0.88 +0.7 943,319 - -0.1 943,319 - +0.8 943,348 + dmsC b0896 0.11 -0.6 943,348 + dmsC b0896 0.11 -0.6 943,348 + dmsC b0896 0.11 -1.0 943,412 - dmsC b0896 0.18 -1.3 943,412 - dmsC b0896 0.18 -0.0 943,485 + dmsC b0896 0.27 +0.4 943,661 + dmsC b0896 0.47 -0.0 943,663 + dmsC b0896 0.47 +0.4 943,663 - dmsC b0896 0.47 +0.5 943,669 - dmsC b0896 0.48 -0.3 943,672 + dmsC b0896 0.48 -0.1 943,680 - dmsC b0896 0.49 +1.1 943,682 + dmsC b0896 0.49 -0.2 943,732 + dmsC b0896 0.55 -0.3 943,758 + dmsC b0896 0.58 +0.5 943,833 - dmsC b0896 0.67 +1.2 943,833 - dmsC b0896 0.67 -0.1 943,878 - dmsC b0896 0.72 -1.2 943,910 - dmsC b0896 0.76 -0.2 943,977 - dmsC b0896 0.83 +0.7 943,985 - dmsC b0896 0.84 +0.0 944,080 - -0.0 944,082 + -0.5 944,082 + -1.1 944,082 - +0.2 944,086 + -0.1 944,093 + +0.5 944,101 - +0.1 944,105 + -0.8 944,105 + +0.3 944,121 + -0.3
Or see this region's nucleotide sequence