Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zitB and ybgS are separated by 113 nucleotides ybgS and aroG are separated by 315 nucleotides
b0752: zitB - zinc transporter ZitB (NCBI), at 783,105 to 784,046
zitB
b0753: ybgS - hypothetical protein (NCBI), at 784,160 to 784,540
ybgS
b0754: aroG - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI), at 784,856 to 785,908
aroG
Position (kb) 784
785 Strain fitness (log2 ratio) -1
0
1 at 783.179 kb on - strand at 783.193 kb on - strand at 783.193 kb on - strand at 783.202 kb on + strand, within zitB at 783.202 kb on + strand, within zitB at 783.243 kb on - strand, within zitB at 783.270 kb on + strand, within zitB at 783.270 kb on + strand, within zitB at 783.317 kb on + strand, within zitB at 783.341 kb on + strand, within zitB at 783.352 kb on + strand, within zitB at 783.367 kb on + strand, within zitB at 783.392 kb on - strand, within zitB at 783.426 kb on + strand, within zitB at 783.445 kb on - strand, within zitB at 783.569 kb on - strand, within zitB at 783.763 kb on - strand, within zitB at 783.890 kb on + strand, within zitB at 784.014 kb on + strand at 784.014 kb on + strand at 784.014 kb on + strand at 784.014 kb on - strand at 784.014 kb on - strand at 784.022 kb on - strand at 784.036 kb on - strand at 784.036 kb on - strand at 784.151 kb on + strand at 784.201 kb on - strand, within ybgS at 784.252 kb on + strand, within ybgS at 784.276 kb on - strand, within ybgS at 784.291 kb on + strand, within ybgS at 784.314 kb on - strand, within ybgS at 784.314 kb on - strand, within ybgS at 784.344 kb on + strand, within ybgS at 784.366 kb on - strand, within ybgS at 784.414 kb on - strand, within ybgS at 784.549 kb on + strand at 784.552 kb on - strand at 784.581 kb on - strand at 784.581 kb on - strand at 784.601 kb on + strand at 784.992 kb on - strand, within aroG at 785.161 kb on + strand, within aroG at 785.184 kb on - strand, within aroG at 785.217 kb on - strand, within aroG at 785.301 kb on + strand, within aroG at 785.497 kb on - strand, within aroG
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.5 vol% remove 783,179 - +0.6 783,193 - +0.3 783,193 - -1.4 783,202 + zitB b0752 0.10 +0.1 783,202 + zitB b0752 0.10 -0.8 783,243 - zitB b0752 0.15 -0.3 783,270 + zitB b0752 0.18 -0.3 783,270 + zitB b0752 0.18 -0.7 783,317 + zitB b0752 0.23 +0.1 783,341 + zitB b0752 0.25 +0.1 783,352 + zitB b0752 0.26 +0.7 783,367 + zitB b0752 0.28 -0.0 783,392 - zitB b0752 0.30 +0.2 783,426 + zitB b0752 0.34 -0.4 783,445 - zitB b0752 0.36 +0.1 783,569 - zitB b0752 0.49 +0.7 783,763 - zitB b0752 0.70 +0.0 783,890 + zitB b0752 0.83 -0.3 784,014 + -0.1 784,014 + -0.4 784,014 + +0.1 784,014 - -0.3 784,014 - -1.2 784,022 - -0.7 784,036 - +0.2 784,036 - -0.2 784,151 + -0.0 784,201 - ybgS b0753 0.11 +1.0 784,252 + ybgS b0753 0.24 +0.7 784,276 - ybgS b0753 0.30 -0.3 784,291 + ybgS b0753 0.34 +0.7 784,314 - ybgS b0753 0.40 -0.2 784,314 - ybgS b0753 0.40 +0.4 784,344 + ybgS b0753 0.48 -1.0 784,366 - ybgS b0753 0.54 +0.8 784,414 - ybgS b0753 0.67 +1.2 784,549 + +0.3 784,552 - -0.8 784,581 - -0.2 784,581 - -0.6 784,601 + -0.7 784,992 - aroG b0754 0.13 -1.2 785,161 + aroG b0754 0.29 -0.0 785,184 - aroG b0754 0.31 +0.3 785,217 - aroG b0754 0.34 +0.4 785,301 + aroG b0754 0.42 -0.6 785,497 - aroG b0754 0.61 +0.2
Or see this region's nucleotide sequence