Strain Fitness in Escherichia coli BW25113 around b0230
Experiment: 1-Pentanol 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1-Pentanol 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
249,077 | + | lfhA | b0229 | 0.42 | +0.1 |
249,103 | - | lfhA | b0229 | 0.43 | +0.7 |
249,388 | - | lfhA | b0229 | 0.60 | -0.5 |
249,432 | + | lfhA | b0229 | 0.63 | +0.1 |
249,572 | - | lfhA | b0229 | 0.71 | +0.2 |
249,572 | - | lfhA | b0229 | 0.71 | -0.3 |
249,594 | - | lfhA | b0229 | 0.72 | +0.1 |
249,687 | - | lfhA | b0229 | 0.78 | +0.6 |
249,744 | + | lfhA | b0229 | 0.81 | +0.4 |
250,046 | + | +0.2 | |||
250,049 | + | -0.3 | |||
250,049 | + | +0.5 | |||
250,295 | - | mbhA | b0230 | 0.29 | -0.1 |
250,295 | - | mbhA | b0230 | 0.29 | +0.2 |
250,355 | + | mbhA | b0230 | 0.37 | +0.2 |
250,374 | + | mbhA | b0230 | 0.40 | +0.5 |
250,389 | + | mbhA | b0230 | 0.42 | +1.0 |
250,426 | + | mbhA | b0230 | 0.47 | -0.3 |
250,442 | - | mbhA | b0230 | 0.49 | -0.2 |
250,473 | - | mbhA | b0230 | 0.53 | +0.7 |
250,501 | + | mbhA | b0230 | 0.57 | +0.7 |
250,559 | - | mbhA | b0230 | 0.64 | +0.3 |
250,594 | - | mbhA | b0230 | 0.69 | +0.6 |
250,697 | + | mbhA | b0230 | 0.83 | +0.6 |
250,718 | - | mbhA | b0230 | 0.85 | +0.6 |
250,718 | - | mbhA | b0230 | 0.85 | -1.4 |
250,729 | + | mbhA | b0230 | 0.87 | +0.7 |
250,959 | + | +0.6 | |||
250,988 | - | +0.0 | |||
251,129 | - | -2.9 | |||
251,129 | - | dinB | b0231 | 0.22 | +0.6 |
251,214 | + | dinB | b0231 | 0.30 | -0.5 |
251,240 | + | dinB | b0231 | 0.32 | -0.8 |
251,240 | + | dinB | b0231 | 0.32 | +0.6 |
251,240 | - | dinB | b0231 | 0.32 | -0.9 |
251,240 | - | dinB | b0231 | 0.32 | -0.2 |
251,255 | - | dinB | b0231 | 0.34 | +0.0 |
251,499 | - | dinB | b0231 | 0.57 | -0.0 |
251,499 | - | dinB | b0231 | 0.57 | +0.4 |
251,579 | - | dinB | b0231 | 0.64 | -0.3 |
251,662 | - | dinB | b0231 | 0.72 | +0.4 |
251,669 | + | dinB | b0231 | 0.73 | +0.2 |
251,803 | + | dinB | b0231 | 0.86 | -0.3 |
251,803 | + | dinB | b0231 | 0.86 | -1.1 |
251,818 | + | dinB | b0231 | 0.87 | +0.6 |
Or see this region's nucleotide sequence