Strain Fitness in Escherichia coli BW25113 around b1829
Experiment: Caprolactam 7 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Caprolactam 7 vol% |
---|---|---|---|---|---|
remove | |||||
1,908,762 | - | b1828 | b1828 | 0.34 | +0.1 |
1,908,789 | - | b1828 | b1828 | 0.36 | -0.6 |
1,908,902 | - | b1828 | b1828 | 0.44 | -0.2 |
1,908,922 | - | b1828 | b1828 | 0.45 | +0.9 |
1,908,968 | - | b1828 | b1828 | 0.49 | +0.4 |
1,909,023 | - | b1828 | b1828 | 0.53 | -0.7 |
1,909,405 | + | b1828 | b1828 | 0.80 | -0.1 |
1,909,411 | + | b1828 | b1828 | 0.81 | -0.3 |
1,909,437 | + | b1828 | b1828 | 0.83 | +0.5 |
1,909,623 | - | +0.5 | |||
1,909,623 | - | -0.2 | |||
1,909,831 | - | htpX | b1829 | 0.13 | +1.1 |
1,909,831 | - | htpX | b1829 | 0.13 | -0.2 |
1,910,032 | + | htpX | b1829 | 0.35 | +0.4 |
1,910,119 | + | htpX | b1829 | 0.45 | +2.2 |
1,910,119 | + | htpX | b1829 | 0.45 | +0.6 |
1,910,121 | + | htpX | b1829 | 0.46 | -0.2 |
1,910,143 | - | htpX | b1829 | 0.48 | -0.4 |
1,910,228 | - | htpX | b1829 | 0.58 | +0.1 |
1,910,486 | - | htpX | b1829 | 0.87 | +0.4 |
1,910,486 | - | htpX | b1829 | 0.87 | -0.6 |
1,910,624 | + | +0.0 | |||
1,910,643 | + | -0.6 | |||
1,910,686 | + | +1.4 | |||
1,910,686 | + | -0.2 | |||
1,910,877 | - | -1.4 | |||
1,910,898 | - | -0.4 | |||
1,911,010 | - | +2.2 | |||
1,911,068 | + | prc | b1830 | 0.13 | -1.7 |
1,911,197 | - | prc | b1830 | 0.20 | +0.5 |
1,911,283 | + | prc | b1830 | 0.24 | +0.1 |
1,911,318 | + | prc | b1830 | 0.26 | +0.9 |
1,911,341 | - | prc | b1830 | 0.27 | -2.6 |
1,911,341 | - | prc | b1830 | 0.27 | -0.7 |
1,911,400 | - | prc | b1830 | 0.30 | -0.4 |
1,911,400 | - | prc | b1830 | 0.30 | +0.6 |
1,911,511 | - | prc | b1830 | 0.35 | -2.6 |
1,911,511 | - | prc | b1830 | 0.35 | -0.4 |
1,911,530 | - | prc | b1830 | 0.36 | -0.3 |
1,911,546 | - | prc | b1830 | 0.37 | -0.0 |
1,911,546 | - | prc | b1830 | 0.37 | -1.7 |
Or see this region's nucleotide sequence