Strain Fitness in Escherichia coli BW25113 around b1220
Experiment: Caprolactam 7 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Caprolactam 7 vol% |
---|---|---|---|---|---|
remove | |||||
1,272,143 | - | chaC | b1218 | 0.59 | +0.1 |
1,272,159 | - | chaC | b1218 | 0.62 | -1.7 |
1,272,288 | - | chaC | b1218 | 0.80 | -0.2 |
1,272,522 | - | ychN | b1219 | 0.15 | -1.2 |
1,272,532 | - | ychN | b1219 | 0.18 | +0.0 |
1,272,581 | - | ychN | b1219 | 0.32 | -0.4 |
1,272,615 | - | ychN | b1219 | 0.41 | -0.1 |
1,272,714 | + | ychN | b1219 | 0.69 | -0.1 |
1,272,787 | - | +0.3 | |||
1,272,787 | - | +0.7 | |||
1,273,039 | + | -0.0 | |||
1,273,305 | + | ychO | b1220 | 0.21 | +0.4 |
1,273,328 | - | ychO | b1220 | 0.23 | +1.7 |
1,273,328 | - | ychO | b1220 | 0.23 | +0.8 |
1,273,463 | + | ychO | b1220 | 0.33 | +0.7 |
1,273,493 | + | ychO | b1220 | 0.35 | -0.1 |
1,273,732 | + | ychO | b1220 | 0.52 | +0.6 |
1,273,737 | + | ychO | b1220 | 0.52 | -0.3 |
1,273,930 | - | ychO | b1220 | 0.66 | +0.2 |
1,274,003 | + | ychO | b1220 | 0.71 | -0.2 |
1,274,343 | - | +0.4 | |||
1,274,391 | + | +0.3 | |||
1,274,489 | - | narL | b1221 | 0.13 | +0.0 |
1,274,543 | + | narL | b1221 | 0.22 | +0.7 |
1,274,543 | + | narL | b1221 | 0.22 | +0.3 |
1,274,583 | - | narL | b1221 | 0.28 | +0.2 |
1,274,668 | - | narL | b1221 | 0.41 | -0.3 |
1,274,677 | - | narL | b1221 | 0.42 | +0.4 |
1,274,677 | - | narL | b1221 | 0.42 | +0.5 |
1,275,022 | + | -0.6 | |||
1,275,022 | + | +0.7 | |||
1,275,035 | - | -0.4 | |||
1,275,035 | - | -0.2 |
Or see this region's nucleotide sequence