Experiment: Caprolactam 7 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjQ and ybjR overlap by 4 nucleotides ybjR and b0868 overlap by 4 nucleotides b0868 and ybjT are separated by 98 nucleotides
b0866: ybjQ - hypothetical protein (NCBI), at 903,816 to 904,139
ybjQ
b0867: ybjR - predicted amidase and lipoprotein (NCBI), at 904,136 to 904,966
ybjR
b0868: b0868 - putative nucleotide di-P-sugar epimerase or dehydratase (VIMSS), at 904,963 to 905,976
b0868
b0869: ybjT - putative dTDP-glucose enzyme (VIMSS), at 906,075 to 907,505
ybjT
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1 at 904.093 kb on + strand, within ybjQ at 904.156 kb on + strand at 904.183 kb on + strand at 904.271 kb on - strand, within ybjR at 904.282 kb on + strand, within ybjR at 904.298 kb on + strand, within ybjR at 904.352 kb on - strand, within ybjR at 904.465 kb on + strand, within ybjR at 904.477 kb on - strand, within ybjR at 904.477 kb on - strand, within ybjR at 904.479 kb on + strand, within ybjR at 904.558 kb on + strand, within ybjR at 904.597 kb on - strand, within ybjR at 904.765 kb on - strand, within ybjR at 904.775 kb on - strand, within ybjR at 904.812 kb on - strand, within ybjR at 904.812 kb on - strand, within ybjR at 904.812 kb on - strand, within ybjR at 904.824 kb on + strand, within ybjR at 904.830 kb on + strand, within ybjR at 904.830 kb on + strand, within ybjR at 904.838 kb on - strand, within ybjR at 904.935 kb on + strand at 904.968 kb on - strand at 905.027 kb on - strand at 905.245 kb on + strand, within b0868 at 905.246 kb on - strand, within b0868 at 905.246 kb on - strand, within b0868 at 905.248 kb on + strand, within b0868 at 905.253 kb on + strand, within b0868 at 905.261 kb on - strand, within b0868 at 905.261 kb on - strand, within b0868 at 905.275 kb on - strand, within b0868 at 905.278 kb on + strand, within b0868 at 905.278 kb on + strand, within b0868 at 905.284 kb on - strand, within b0868 at 905.286 kb on - strand, within b0868 at 905.357 kb on - strand, within b0868 at 905.357 kb on - strand, within b0868 at 905.376 kb on - strand, within b0868 at 905.402 kb on + strand, within b0868 at 905.468 kb on + strand, within b0868 at 905.489 kb on - strand, within b0868 at 905.525 kb on - strand, within b0868 at 905.543 kb on + strand, within b0868 at 905.734 kb on + strand, within b0868 at 905.734 kb on + strand, within b0868 at 905.735 kb on + strand, within b0868 at 905.735 kb on + strand, within b0868 at 905.746 kb on + strand, within b0868 at 905.964 kb on + strand at 906.135 kb on - strand at 906.263 kb on - strand, within ybjT at 906.527 kb on + strand, within ybjT at 906.527 kb on + strand, within ybjT at 906.635 kb on - strand, within ybjT at 906.667 kb on - strand, within ybjT at 906.667 kb on - strand, within ybjT at 906.865 kb on - strand, within ybjT
Per-strain Table
Position Strand Gene LocusTag Fraction Caprolactam 7 vol% remove 904,093 + ybjQ b0866 0.85 +0.4 904,156 + +0.5 904,183 + -0.1 904,271 - ybjR b0867 0.16 -0.3 904,282 + ybjR b0867 0.18 -0.3 904,298 + ybjR b0867 0.19 -0.1 904,352 - ybjR b0867 0.26 -0.4 904,465 + ybjR b0867 0.40 -0.6 904,477 - ybjR b0867 0.41 -0.6 904,477 - ybjR b0867 0.41 -0.3 904,479 + ybjR b0867 0.41 +0.7 904,558 + ybjR b0867 0.51 -0.1 904,597 - ybjR b0867 0.55 -0.1 904,765 - ybjR b0867 0.76 -0.5 904,775 - ybjR b0867 0.77 -0.3 904,812 - ybjR b0867 0.81 -0.2 904,812 - ybjR b0867 0.81 -0.5 904,812 - ybjR b0867 0.81 +0.8 904,824 + ybjR b0867 0.83 -0.8 904,830 + ybjR b0867 0.84 -0.3 904,830 + ybjR b0867 0.84 +0.3 904,838 - ybjR b0867 0.84 -0.1 904,935 + -0.2 904,968 - +0.1 905,027 - -0.3 905,245 + b0868 b0868 0.28 -0.1 905,246 - b0868 b0868 0.28 +0.2 905,246 - b0868 b0868 0.28 -0.1 905,248 + b0868 b0868 0.28 -0.6 905,253 + b0868 b0868 0.29 -0.4 905,261 - b0868 b0868 0.29 +0.1 905,261 - b0868 b0868 0.29 -0.3 905,275 - b0868 b0868 0.31 -0.1 905,278 + b0868 b0868 0.31 +0.0 905,278 + b0868 b0868 0.31 +0.1 905,284 - b0868 b0868 0.32 -0.3 905,286 - b0868 b0868 0.32 +0.2 905,357 - b0868 b0868 0.39 +0.0 905,357 - b0868 b0868 0.39 +0.4 905,376 - b0868 b0868 0.41 -0.1 905,402 + b0868 b0868 0.43 -0.2 905,468 + b0868 b0868 0.50 +0.4 905,489 - b0868 b0868 0.52 +0.1 905,525 - b0868 b0868 0.55 +0.0 905,543 + b0868 b0868 0.57 +0.3 905,734 + b0868 b0868 0.76 +0.2 905,734 + b0868 b0868 0.76 -0.3 905,735 + b0868 b0868 0.76 -0.1 905,735 + b0868 b0868 0.76 -0.8 905,746 + b0868 b0868 0.77 +0.4 905,964 + -1.9 906,135 - -0.2 906,263 - ybjT b0869 0.13 -1.3 906,527 + ybjT b0869 0.32 -0.4 906,527 + ybjT b0869 0.32 -0.2 906,635 - ybjT b0869 0.39 +0.0 906,667 - ybjT b0869 0.41 +0.6 906,667 - ybjT b0869 0.41 -0.0 906,865 - ybjT b0869 0.55 -0.3
Or see this region's nucleotide sequence