Experiment: Caprolactam 7 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sroB and ybaP overlap by 2 nucleotides ybaP and ybaQ are separated by 137 nucleotides ybaQ and copA are separated by 315 nucleotides
b4585: sroB - Novel sRNA, function unknown (RefSeq), at 506,428 to 506,511
sroB
b0482: ybaP - hypothetical protein (NCBI), at 506,510 to 507,304
ybaP
b0483: ybaQ - orf, hypothetical protein (VIMSS), at 507,442 to 507,783
ybaQ
b0484: copA - copper transporter (NCBI), at 508,099 to 510,603
copA
Position (kb) 507
508 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 506.443 kb on - strand, within sroB at 506.556 kb on - strand at 506.559 kb on - strand at 506.563 kb on - strand at 506.563 kb on - strand at 506.580 kb on - strand at 506.630 kb on + strand, within ybaP at 506.630 kb on + strand, within ybaP at 506.630 kb on + strand, within ybaP at 506.679 kb on - strand, within ybaP at 506.692 kb on + strand, within ybaP at 506.692 kb on + strand, within ybaP at 506.748 kb on - strand, within ybaP at 506.752 kb on - strand, within ybaP at 506.752 kb on - strand, within ybaP at 506.766 kb on - strand, within ybaP at 506.985 kb on - strand, within ybaP at 507.001 kb on - strand, within ybaP at 507.041 kb on + strand, within ybaP at 507.051 kb on + strand, within ybaP at 507.170 kb on - strand, within ybaP at 507.254 kb on - strand at 507.573 kb on + strand, within ybaQ at 507.573 kb on + strand, within ybaQ at 507.576 kb on - strand, within ybaQ at 507.576 kb on - strand, within ybaQ at 507.581 kb on - strand, within ybaQ at 507.604 kb on - strand, within ybaQ at 507.720 kb on - strand, within ybaQ at 507.723 kb on + strand, within ybaQ at 507.731 kb on - strand, within ybaQ at 507.731 kb on - strand, within ybaQ at 507.752 kb on + strand at 507.752 kb on + strand at 507.760 kb on - strand at 507.760 kb on - strand at 508.029 kb on - strand at 508.043 kb on + strand at 508.098 kb on - strand at 508.098 kb on - strand at 508.141 kb on - strand at 508.148 kb on - strand at 508.189 kb on + strand at 508.189 kb on + strand at 508.412 kb on + strand, within copA at 508.433 kb on + strand, within copA at 508.452 kb on + strand, within copA at 508.452 kb on + strand, within copA at 508.475 kb on - strand, within copA at 508.585 kb on + strand, within copA at 508.585 kb on + strand, within copA at 508.601 kb on - strand, within copA at 508.608 kb on - strand at 508.646 kb on - strand, within copA at 508.646 kb on - strand, within copA at 508.704 kb on + strand, within copA at 508.783 kb on - strand, within copA
Per-strain Table
Position Strand Gene LocusTag Fraction Caprolactam 7 vol% remove 506,443 - sroB b4585 0.18 -0.8 506,556 - -0.1 506,559 - +0.0 506,563 - -0.3 506,563 - +0.3 506,580 - +0.1 506,630 + ybaP b0482 0.15 -0.4 506,630 + ybaP b0482 0.15 -0.3 506,630 + ybaP b0482 0.15 +0.2 506,679 - ybaP b0482 0.21 -0.2 506,692 + ybaP b0482 0.23 -0.1 506,692 + ybaP b0482 0.23 -1.2 506,748 - ybaP b0482 0.30 -0.3 506,752 - ybaP b0482 0.30 +0.1 506,752 - ybaP b0482 0.30 +0.4 506,766 - ybaP b0482 0.32 +0.4 506,985 - ybaP b0482 0.60 +0.3 507,001 - ybaP b0482 0.62 +0.1 507,041 + ybaP b0482 0.67 +0.4 507,051 + ybaP b0482 0.68 -0.5 507,170 - ybaP b0482 0.83 -0.3 507,254 - -0.1 507,573 + ybaQ b0483 0.38 +0.6 507,573 + ybaQ b0483 0.38 +0.1 507,576 - ybaQ b0483 0.39 +1.0 507,576 - ybaQ b0483 0.39 +0.4 507,581 - ybaQ b0483 0.41 -0.0 507,604 - ybaQ b0483 0.47 +0.3 507,720 - ybaQ b0483 0.81 +0.9 507,723 + ybaQ b0483 0.82 -0.4 507,731 - ybaQ b0483 0.85 +0.6 507,731 - ybaQ b0483 0.85 +0.0 507,752 + -0.5 507,752 + -0.2 507,760 - +0.7 507,760 - -0.9 508,029 - +0.4 508,043 + +0.0 508,098 - +0.2 508,098 - +0.6 508,141 - +0.2 508,148 - -0.7 508,189 + +0.2 508,189 + -0.3 508,412 + copA b0484 0.12 +0.5 508,433 + copA b0484 0.13 -0.3 508,452 + copA b0484 0.14 -0.7 508,452 + copA b0484 0.14 -0.2 508,475 - copA b0484 0.15 -0.3 508,585 + copA b0484 0.19 -0.3 508,585 + copA b0484 0.19 -0.6 508,601 - copA b0484 0.20 -0.1 508,608 - +2.8 508,646 - copA b0484 0.22 -0.6 508,646 - copA b0484 0.22 -0.3 508,704 + copA b0484 0.24 -0.1 508,783 - copA b0484 0.27 -1.9
Or see this region's nucleotide sequence