Strain Fitness in Escherichia coli BW25113 around b3032
Experiment: Isobutyl alcohol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Isobutyl alcohol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
3,173,456 | + | -0.3 | |||
3,173,509 | - | yqiA | b3031 | 0.11 | -0.0 |
3,173,533 | - | yqiA | b3031 | 0.15 | -0.3 |
3,173,571 | + | yqiA | b3031 | 0.21 | -0.5 |
3,173,682 | + | yqiA | b3031 | 0.40 | -0.1 |
3,173,697 | + | yqiA | b3031 | 0.43 | +0.2 |
3,173,705 | - | yqiA | b3031 | 0.44 | -0.0 |
3,173,705 | - | yqiA | b3031 | 0.44 | -0.4 |
3,173,705 | - | yqiA | b3031 | 0.44 | +0.1 |
3,173,705 | - | yqiA | b3031 | 0.44 | +0.7 |
3,173,705 | - | yqiA | b3031 | 0.44 | +0.7 |
3,173,724 | - | yqiA | b3031 | 0.48 | -0.2 |
3,173,762 | + | yqiA | b3031 | 0.54 | +0.4 |
3,173,802 | + | yqiA | b3031 | 0.61 | +0.2 |
3,173,805 | + | yqiA | b3031 | 0.62 | -0.1 |
3,173,835 | + | yqiA | b3031 | 0.67 | -0.4 |
3,173,835 | + | yqiA | b3031 | 0.67 | +1.7 |
3,173,999 | - | +0.5 | |||
3,174,018 | + | -0.3 | |||
3,174,018 | + | +0.2 | |||
3,174,070 | + | +1.2 | |||
3,174,070 | + | +0.0 | |||
3,174,125 | + | cpdA | b3032 | 0.12 | +0.5 |
3,174,140 | + | cpdA | b3032 | 0.14 | -0.7 |
3,174,150 | + | cpdA | b3032 | 0.15 | +0.1 |
3,174,156 | + | cpdA | b3032 | 0.15 | +0.4 |
3,174,178 | - | cpdA | b3032 | 0.18 | -0.1 |
3,174,221 | - | cpdA | b3032 | 0.23 | +0.6 |
3,174,271 | - | cpdA | b3032 | 0.29 | +0.9 |
3,174,271 | - | cpdA | b3032 | 0.29 | +0.3 |
3,174,303 | - | cpdA | b3032 | 0.33 | +0.6 |
3,174,332 | + | cpdA | b3032 | 0.37 | +0.0 |
3,174,332 | + | cpdA | b3032 | 0.37 | +1.1 |
3,174,373 | - | cpdA | b3032 | 0.42 | +0.3 |
3,174,373 | - | cpdA | b3032 | 0.42 | +0.7 |
3,174,405 | + | cpdA | b3032 | 0.46 | +0.3 |
3,174,433 | - | cpdA | b3032 | 0.49 | +1.1 |
3,174,457 | + | cpdA | b3032 | 0.52 | +0.6 |
3,174,503 | + | cpdA | b3032 | 0.57 | +0.5 |
3,174,506 | + | cpdA | b3032 | 0.58 | -0.2 |
3,174,647 | + | cpdA | b3032 | 0.75 | +0.9 |
3,174,694 | + | cpdA | b3032 | 0.80 | -0.5 |
3,174,749 | + | cpdA | b3032 | 0.87 | +0.3 |
3,174,749 | + | cpdA | b3032 | 0.87 | +0.7 |
3,174,749 | + | cpdA | b3032 | 0.87 | -0.5 |
3,174,791 | - | +0.4 | |||
3,174,825 | - | -0.0 | |||
3,174,825 | - | +3.1 | |||
3,174,905 | - | -1.1 | |||
3,174,915 | - | -0.1 | |||
3,174,927 | - | yqiB | b3033 | 0.11 | +0.1 |
3,175,065 | + | yqiB | b3033 | 0.44 | +0.2 |
3,175,116 | + | yqiB | b3033 | 0.56 | +0.5 |
3,175,126 | + | yqiB | b3033 | 0.58 | +0.1 |
3,175,171 | - | yqiB | b3033 | 0.69 | -0.8 |
3,175,226 | + | yqiB | b3033 | 0.82 | -0.1 |
3,175,399 | - | nudF | b3034 | 0.15 | -0.6 |
3,175,469 | - | nudF | b3034 | 0.26 | -0.5 |
3,175,494 | - | nudF | b3034 | 0.30 | -1.1 |
3,175,494 | - | nudF | b3034 | 0.30 | -1.8 |
3,175,528 | - | nudF | b3034 | 0.36 | -0.3 |
3,175,577 | + | nudF | b3034 | 0.43 | +2.9 |
3,175,585 | + | nudF | b3034 | 0.45 | -0.0 |
3,175,590 | - | nudF | b3034 | 0.46 | -0.7 |
3,175,662 | + | nudF | b3034 | 0.57 | +0.2 |
3,175,679 | + | nudF | b3034 | 0.60 | -0.7 |
3,175,679 | + | nudF | b3034 | 0.60 | +0.4 |
3,175,752 | - | nudF | b3034 | 0.71 | -0.0 |
3,175,798 | + | nudF | b3034 | 0.79 | -0.4 |
3,175,818 | - | nudF | b3034 | 0.82 | +0.1 |
3,175,823 | - | nudF | b3034 | 0.83 | +0.1 |
Or see this region's nucleotide sequence