Strain Fitness in Escherichia coli BW25113 around b2917

Experiment: Isobutyl alcohol 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargP and yliK are separated by 203 nucleotidesyliK and argK overlap by 8 nucleotidesargK and ygfG are separated by 10 nucleotides b2916: argP - chromosome replication initiation inhibitor protein (NCBI), at 3,057,775 to 3,058,668 argP b2917: yliK - methylmalonyl-CoA mutase (NCBI), at 3,058,872 to 3,061,016 yliK b2918: argK - arginine/ornithine transport system ATPase (NCBI), at 3,061,009 to 3,062,004 argK b2919: ygfG - putative enzyme (VIMSS), at 3,062,015 to 3,062,800 ygfG Position (kb) 3058 3059 3060 3061 3062Strain fitness (log2 ratio) -1 0 1at 3057.927 kb on + strand, within argPat 3057.989 kb on + strand, within argPat 3057.989 kb on + strand, within argPat 3058.012 kb on - strand, within argPat 3058.012 kb on - strand, within argPat 3058.242 kb on + strand, within argPat 3058.275 kb on - strand, within argPat 3058.275 kb on - strand, within argPat 3058.275 kb on - strand, within argPat 3058.352 kb on + strand, within argPat 3058.352 kb on + strand, within argPat 3058.408 kb on + strand, within argPat 3058.459 kb on + strand, within argPat 3058.459 kb on + strand, within argPat 3058.462 kb on + strand, within argPat 3058.462 kb on + strand, within argPat 3058.487 kb on + strand, within argPat 3058.524 kb on - strand, within argPat 3058.726 kb on + strandat 3058.831 kb on + strandat 3059.023 kb on + strandat 3059.023 kb on + strandat 3059.050 kb on + strandat 3059.077 kb on - strandat 3059.077 kb on - strandat 3059.273 kb on - strand, within yliKat 3059.349 kb on + strand, within yliKat 3059.354 kb on + strand, within yliKat 3059.354 kb on + strand, within yliKat 3059.357 kb on - strand, within yliKat 3059.388 kb on - strand, within yliKat 3059.388 kb on - strand, within yliKat 3059.395 kb on + strand, within yliKat 3059.447 kb on - strand, within yliKat 3059.548 kb on - strand, within yliKat 3059.571 kb on - strand, within yliKat 3059.571 kb on - strand, within yliKat 3059.591 kb on - strand, within yliKat 3059.593 kb on - strand, within yliKat 3059.593 kb on - strand, within yliKat 3059.608 kb on + strand, within yliKat 3059.630 kb on - strand, within yliKat 3059.631 kb on + strand, within yliKat 3059.634 kb on - strand, within yliKat 3059.634 kb on - strand, within yliKat 3059.639 kb on - strand, within yliKat 3059.707 kb on + strand, within yliKat 3059.867 kb on - strand, within yliKat 3059.867 kb on - strand, within yliKat 3059.897 kb on + strand, within yliKat 3059.897 kb on + strand, within yliKat 3059.919 kb on - strand, within yliKat 3059.979 kb on - strand, within yliKat 3060.026 kb on + strand, within yliKat 3060.064 kb on - strand, within yliKat 3060.068 kb on + strand, within yliKat 3060.151 kb on + strand, within yliKat 3060.215 kb on + strand, within yliKat 3060.350 kb on - strand, within yliKat 3060.369 kb on + strand, within yliKat 3060.445 kb on + strand, within yliKat 3060.458 kb on - strand, within yliKat 3060.479 kb on - strand, within yliKat 3060.515 kb on - strand, within yliKat 3060.592 kb on - strand, within yliKat 3060.592 kb on - strand, within yliKat 3060.662 kb on - strand, within yliKat 3060.741 kb on + strand, within yliKat 3060.741 kb on + strand, within yliKat 3060.826 kb on + strandat 3060.826 kb on + strandat 3060.926 kb on + strandat 3060.958 kb on + strandat 3060.958 kb on + strandat 3060.963 kb on + strandat 3061.019 kb on + strandat 3061.019 kb on + strandat 3061.082 kb on - strandat 3061.088 kb on - strandat 3061.127 kb on + strand, within argKat 3061.127 kb on + strand, within argKat 3061.292 kb on - strand, within argKat 3061.292 kb on - strand, within argKat 3061.372 kb on + strand, within argKat 3061.387 kb on + strand, within argKat 3061.397 kb on + strand, within argKat 3061.561 kb on - strand, within argKat 3061.654 kb on + strand, within argKat 3061.654 kb on + strand, within argK

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Per-strain Table

Position Strand Gene LocusTag Fraction Isobutyl alcohol 1.25 vol%
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3,057,927 + argP b2916 0.17 -0.5
3,057,989 + argP b2916 0.24 -0.1
3,057,989 + argP b2916 0.24 -0.4
3,058,012 - argP b2916 0.27 -0.2
3,058,012 - argP b2916 0.27 -0.6
3,058,242 + argP b2916 0.52 -0.0
3,058,275 - argP b2916 0.56 -0.7
3,058,275 - argP b2916 0.56 -1.4
3,058,275 - argP b2916 0.56 -0.8
3,058,352 + argP b2916 0.65 -0.2
3,058,352 + argP b2916 0.65 +0.6
3,058,408 + argP b2916 0.71 +0.1
3,058,459 + argP b2916 0.77 +1.0
3,058,459 + argP b2916 0.77 +0.3
3,058,462 + argP b2916 0.77 -1.2
3,058,462 + argP b2916 0.77 +0.5
3,058,487 + argP b2916 0.80 -0.5
3,058,524 - argP b2916 0.84 -0.9
3,058,726 + +0.7
3,058,831 + -1.1
3,059,023 + -0.3
3,059,023 + -0.3
3,059,050 + +0.3
3,059,077 - +0.3
3,059,077 - +0.4
3,059,273 - yliK b2917 0.19 -0.8
3,059,349 + yliK b2917 0.22 +0.1
3,059,354 + yliK b2917 0.22 +0.4
3,059,354 + yliK b2917 0.22 +0.3
3,059,357 - yliK b2917 0.23 -0.6
3,059,388 - yliK b2917 0.24 +0.2
3,059,388 - yliK b2917 0.24 -0.5
3,059,395 + yliK b2917 0.24 +0.1
3,059,447 - yliK b2917 0.27 +0.4
3,059,548 - yliK b2917 0.32 -0.2
3,059,571 - yliK b2917 0.33 +0.7
3,059,571 - yliK b2917 0.33 -0.4
3,059,591 - yliK b2917 0.34 +0.9
3,059,593 - yliK b2917 0.34 -0.4
3,059,593 - yliK b2917 0.34 +0.0
3,059,608 + yliK b2917 0.34 -1.2
3,059,630 - yliK b2917 0.35 -0.2
3,059,631 + yliK b2917 0.35 -0.2
3,059,634 - yliK b2917 0.36 +0.4
3,059,634 - yliK b2917 0.36 -0.4
3,059,639 - yliK b2917 0.36 +0.2
3,059,707 + yliK b2917 0.39 -0.4
3,059,867 - yliK b2917 0.46 +0.5
3,059,867 - yliK b2917 0.46 +0.4
3,059,897 + yliK b2917 0.48 -0.3
3,059,897 + yliK b2917 0.48 +0.2
3,059,919 - yliK b2917 0.49 +0.8
3,059,979 - yliK b2917 0.52 -0.4
3,060,026 + yliK b2917 0.54 +0.7
3,060,064 - yliK b2917 0.56 +0.1
3,060,068 + yliK b2917 0.56 +0.1
3,060,151 + yliK b2917 0.60 -0.2
3,060,215 + yliK b2917 0.63 +0.7
3,060,350 - yliK b2917 0.69 -0.3
3,060,369 + yliK b2917 0.70 +1.1
3,060,445 + yliK b2917 0.73 -0.6
3,060,458 - yliK b2917 0.74 +0.0
3,060,479 - yliK b2917 0.75 -0.2
3,060,515 - yliK b2917 0.77 +0.0
3,060,592 - yliK b2917 0.80 +0.3
3,060,592 - yliK b2917 0.80 +0.1
3,060,662 - yliK b2917 0.83 -0.5
3,060,741 + yliK b2917 0.87 +0.3
3,060,741 + yliK b2917 0.87 +0.2
3,060,826 + +0.2
3,060,826 + -0.6
3,060,926 + +0.1
3,060,958 + -0.6
3,060,958 + -0.6
3,060,963 + +0.3
3,061,019 + -0.4
3,061,019 + -1.1
3,061,082 - -0.5
3,061,088 - +0.3
3,061,127 + argK b2918 0.12 -0.4
3,061,127 + argK b2918 0.12 -0.3
3,061,292 - argK b2918 0.28 +0.7
3,061,292 - argK b2918 0.28 -0.4
3,061,372 + argK b2918 0.36 -0.7
3,061,387 + argK b2918 0.38 -0.3
3,061,397 + argK b2918 0.39 +0.7
3,061,561 - argK b2918 0.55 +0.5
3,061,654 + argK b2918 0.65 +0.4
3,061,654 + argK b2918 0.65 -0.0

Or see this region's nucleotide sequence