Strain Fitness in Escherichia coli BW25113 around b0530
Experiment: Isobutyl alcohol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Isobutyl alcohol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
557,005 | + | +0.0 | |||
557,074 | + | +0.3 | |||
557,074 | + | -0.1 | |||
557,081 | + | +0.2 | |||
557,086 | + | -0.3 | |||
557,090 | + | -0.3 | |||
557,092 | - | +1.5 | |||
557,092 | - | +1.5 | |||
557,094 | + | +0.2 | |||
557,125 | + | +0.7 | |||
557,125 | + | -0.0 | |||
557,171 | + | -0.1 | |||
557,226 | + | +0.6 | |||
557,584 | + | sfmA | b0530 | 0.27 | +0.6 |
557,588 | + | sfmA | b0530 | 0.28 | +1.5 |
557,707 | + | sfmA | b0530 | 0.50 | +1.5 |
557,767 | + | sfmA | b0530 | 0.61 | +1.5 |
557,786 | + | sfmA | b0530 | 0.65 | +0.5 |
557,824 | + | sfmA | b0530 | 0.72 | +0.5 |
557,838 | + | sfmA | b0530 | 0.74 | +1.5 |
557,845 | + | sfmA | b0530 | 0.76 | +1.5 |
557,856 | + | sfmA | b0530 | 0.78 | +1.5 |
557,870 | + | sfmA | b0530 | 0.80 | +4.1 |
557,900 | + | sfmA | b0530 | 0.86 | +3.1 |
557,900 | + | sfmA | b0530 | 0.86 | +1.9 |
557,902 | + | sfmA | b0530 | 0.86 | +1.5 |
557,902 | + | sfmA | b0530 | 0.86 | +0.1 |
557,914 | + | sfmA | b0530 | 0.88 | +0.7 |
557,916 | + | sfmA | b0530 | 0.89 | -0.7 |
557,916 | + | sfmA | b0530 | 0.89 | +0.7 |
557,925 | + | +0.6 | |||
557,925 | + | -3.0 | |||
557,928 | + | -0.6 | |||
557,933 | + | -0.7 | |||
557,938 | + | -0.7 | |||
557,940 | + | -0.1 | |||
557,957 | + | -0.1 | |||
557,957 | + | -0.9 | |||
558,080 | + | +1.5 | |||
558,084 | + | +1.5 | |||
558,274 | - | sfmC | b0531 | 0.11 | +1.5 |
558,320 | - | sfmC | b0531 | 0.18 | +1.5 |
558,320 | - | sfmC | b0531 | 0.18 | +0.5 |
558,332 | - | sfmC | b0531 | 0.19 | +1.5 |
558,334 | + | sfmC | b0531 | 0.20 | +1.5 |
558,383 | + | sfmC | b0531 | 0.27 | -0.5 |
558,404 | - | sfmC | b0531 | 0.30 | +1.5 |
558,425 | - | sfmC | b0531 | 0.33 | +1.5 |
558,439 | - | sfmC | b0531 | 0.35 | +1.5 |
558,480 | - | sfmC | b0531 | 0.41 | +0.7 |
558,480 | - | sfmC | b0531 | 0.41 | +0.2 |
558,480 | - | sfmC | b0531 | 0.41 | +0.4 |
558,488 | - | sfmC | b0531 | 0.42 | +1.5 |
558,501 | - | sfmC | b0531 | 0.44 | +0.3 |
558,517 | + | sfmC | b0531 | 0.46 | +1.5 |
558,539 | + | sfmC | b0531 | 0.49 | +1.5 |
558,556 | - | sfmC | b0531 | 0.52 | +0.9 |
558,650 | - | sfmC | b0531 | 0.65 | -0.1 |
558,659 | - | sfmC | b0531 | 0.67 | +0.3 |
558,693 | - | sfmC | b0531 | 0.72 | -1.8 |
558,695 | - | sfmC | b0531 | 0.72 | +1.5 |
558,695 | - | sfmC | b0531 | 0.72 | +1.5 |
558,695 | - | sfmC | b0531 | 0.72 | +1.5 |
558,719 | - | sfmC | b0531 | 0.75 | +0.7 |
558,719 | - | sfmC | b0531 | 0.75 | +1.2 |
558,722 | + | sfmC | b0531 | 0.76 | +0.5 |
558,722 | + | sfmC | b0531 | 0.76 | -0.8 |
558,733 | - | sfmC | b0531 | 0.77 | -0.7 |
558,735 | - | sfmC | b0531 | 0.78 | -0.7 |
558,740 | - | sfmC | b0531 | 0.78 | +1.5 |
558,740 | - | sfmC | b0531 | 0.78 | +0.3 |
558,755 | - | sfmC | b0531 | 0.81 | +0.1 |
558,763 | + | sfmC | b0531 | 0.82 | +1.5 |
558,763 | + | sfmC | b0531 | 0.82 | +1.5 |
558,763 | + | sfmC | b0531 | 0.82 | +1.5 |
558,771 | - | sfmC | b0531 | 0.83 | +1.5 |
558,771 | - | sfmC | b0531 | 0.83 | -0.5 |
558,771 | - | sfmC | b0531 | 0.83 | +1.5 |
558,774 | + | sfmC | b0531 | 0.83 | +1.5 |
558,775 | + | sfmC | b0531 | 0.83 | +1.5 |
558,810 | - | sfmC | b0531 | 0.88 | -1.7 |
558,812 | + | sfmC | b0531 | 0.89 | +1.5 |
558,812 | + | sfmC | b0531 | 0.89 | +1.5 |
558,812 | + | sfmC | b0531 | 0.89 | +1.5 |
558,812 | + | sfmC | b0531 | 0.89 | +0.5 |
558,820 | - | +0.2 | |||
558,852 | + | -0.1 | |||
558,852 | + | +2.5 | |||
558,855 | + | +1.5 | |||
558,906 | + | +1.5 | |||
558,939 | - | +1.5 | |||
558,955 | + | +1.5 | |||
558,960 | - | +0.5 |
Or see this region's nucleotide sequence