Strain Fitness in Pseudomonas putida KT2440 around PP_1589

Experiment: M9 minimal media_noCarbon with D-Glucose 10 mM; 30C; then outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1588 and PP_1589 are separated by 30 nucleotidesPP_1589 and PP_1590 are separated by 41 nucleotides PP_1588: PP_1588 - N-succinyl-L,L-diaminopimelate aminotransferase alternative, at 1,780,147 to 1,781,343 _1588 PP_1589: PP_1589 - uridylyltransferase, at 1,781,374 to 1,784,076 _1589 PP_1590: PP_1590 - methionine aminopeptidase, at 1,784,118 to 1,784,900 _1590 Position (kb) 1781 1782 1783 1784 1785Strain fitness (log2 ratio) -3 -2 -1 0 1at 1780.422 kb on - strand, within PP_1588at 1780.454 kb on - strand, within PP_1588at 1780.454 kb on - strand, within PP_1588at 1780.523 kb on + strand, within PP_1588at 1780.523 kb on + strand, within PP_1588at 1780.706 kb on + strand, within PP_1588at 1780.706 kb on + strand, within PP_1588at 1780.706 kb on + strand, within PP_1588at 1780.707 kb on - strand, within PP_1588at 1780.807 kb on - strand, within PP_1588at 1780.913 kb on + strand, within PP_1588at 1780.914 kb on - strand, within PP_1588at 1780.914 kb on - strand, within PP_1588at 1780.952 kb on + strand, within PP_1588at 1780.953 kb on - strand, within PP_1588at 1780.953 kb on - strand, within PP_1588at 1780.961 kb on + strand, within PP_1588at 1780.962 kb on - strand, within PP_1588at 1782.245 kb on + strand, within PP_1589at 1782.245 kb on + strand, within PP_1589at 1782.246 kb on - strand, within PP_1589at 1782.246 kb on - strand, within PP_1589at 1782.322 kb on + strand, within PP_1589at 1782.322 kb on + strand, within PP_1589at 1782.322 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.326 kb on + strand, within PP_1589at 1782.327 kb on - strand, within PP_1589at 1782.327 kb on - strand, within PP_1589at 1782.327 kb on - strand, within PP_1589at 1782.327 kb on - strand, within PP_1589at 1782.327 kb on - strand, within PP_1589at 1782.327 kb on - strand, within PP_1589at 1782.332 kb on + strand, within PP_1589at 1782.332 kb on + strand, within PP_1589at 1782.333 kb on - strand, within PP_1589at 1782.560 kb on + strand, within PP_1589at 1782.561 kb on - strand, within PP_1589at 1782.576 kb on - strand, within PP_1589at 1782.647 kb on + strand, within PP_1589at 1782.647 kb on + strand, within PP_1589at 1782.648 kb on - strand, within PP_1589at 1782.648 kb on - strand, within PP_1589at 1782.685 kb on - strand, within PP_1589at 1782.685 kb on - strand, within PP_1589at 1782.699 kb on + strand, within PP_1589at 1782.699 kb on + strand, within PP_1589at 1782.700 kb on - strand, within PP_1589at 1782.700 kb on - strandat 1782.700 kb on - strand, within PP_1589at 1782.701 kb on + strand, within PP_1589at 1782.701 kb on + strand, within PP_1589at 1782.701 kb on + strand, within PP_1589at 1782.702 kb on - strand, within PP_1589at 1782.702 kb on - strand, within PP_1589at 1782.846 kb on + strand, within PP_1589at 1782.931 kb on + strandat 1783.020 kb on - strand, within PP_1589at 1784.957 kb on - strandat 1784.957 kb on - strandat 1785.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 minimal media_noCarbon with D-Glucose 10 mM; 30C; then outgrowth in LB
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1,780,422 - PP_1588 0.23 -0.1
1,780,454 - PP_1588 0.26 -0.3
1,780,454 - PP_1588 0.26 -0.4
1,780,523 + PP_1588 0.31 -1.3
1,780,523 + PP_1588 0.31 -0.3
1,780,706 + PP_1588 0.47 +0.1
1,780,706 + PP_1588 0.47 +0.2
1,780,706 + PP_1588 0.47 +0.8
1,780,707 - PP_1588 0.47 -0.1
1,780,807 - PP_1588 0.55 -2.1
1,780,913 + PP_1588 0.64 -0.3
1,780,914 - PP_1588 0.64 -0.7
1,780,914 - PP_1588 0.64 +1.3
1,780,952 + PP_1588 0.67 +0.5
1,780,953 - PP_1588 0.67 +0.7
1,780,953 - PP_1588 0.67 -0.1
1,780,961 + PP_1588 0.68 -0.5
1,780,962 - PP_1588 0.68 +0.5
1,782,245 + PP_1589 0.32 +0.5
1,782,245 + PP_1589 0.32 +0.2
1,782,246 - PP_1589 0.32 -1.7
1,782,246 - PP_1589 0.32 -1.2
1,782,322 + PP_1589 0.35 -1.6
1,782,322 + PP_1589 0.35 -0.5
1,782,322 + PP_1589 0.35 -0.2
1,782,326 + PP_1589 0.35 -0.7
1,782,326 + PP_1589 0.35 -0.6
1,782,326 + PP_1589 0.35 -1.4
1,782,326 + PP_1589 0.35 -0.4
1,782,326 + PP_1589 0.35 -0.2
1,782,326 + PP_1589 0.35 -1.4
1,782,326 + PP_1589 0.35 -1.1
1,782,327 - PP_1589 0.35 +0.5
1,782,327 - PP_1589 0.35 +0.1
1,782,327 - PP_1589 0.35 -0.5
1,782,327 - PP_1589 0.35 -0.4
1,782,327 - PP_1589 0.35 -1.0
1,782,327 - PP_1589 0.35 -0.6
1,782,332 + PP_1589 0.35 -1.3
1,782,332 + PP_1589 0.35 -1.2
1,782,333 - PP_1589 0.35 -0.2
1,782,560 + PP_1589 0.44 -0.2
1,782,561 - PP_1589 0.44 -1.6
1,782,576 - PP_1589 0.44 -0.8
1,782,647 + PP_1589 0.47 +0.0
1,782,647 + PP_1589 0.47 -0.3
1,782,648 - PP_1589 0.47 -3.0
1,782,648 - PP_1589 0.47 -0.3
1,782,685 - PP_1589 0.49 +0.0
1,782,685 - PP_1589 0.49 -0.7
1,782,699 + PP_1589 0.49 -2.3
1,782,699 + PP_1589 0.49 -1.1
1,782,700 - PP_1589 0.49 -0.4
1,782,700 - +0.6
1,782,700 - PP_1589 0.49 -0.1
1,782,701 + PP_1589 0.49 -1.7
1,782,701 + PP_1589 0.49 -0.1
1,782,701 + PP_1589 0.49 -2.9
1,782,702 - PP_1589 0.49 -0.5
1,782,702 - PP_1589 0.49 -3.0
1,782,846 + PP_1589 0.54 -1.0
1,782,931 + -0.4
1,783,020 - PP_1589 0.61 +0.1
1,784,957 - -0.3
1,784,957 - -1.0
1,785,007 + +0.1

Or see this region's nucleotide sequence