Strain Fitness in Pseudomonas putida KT2440 around PP_1139

Experiment: M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1137 and PP_1138 are separated by 0 nucleotidesPP_1138 and PP_1139 overlap by 4 nucleotidesPP_1139 and PP_1140 overlap by 4 nucleotides PP_1137: PP_1137 - high-affinity branched-chain amino acid transporter, ATP binding, at 1,302,674 to 1,303,375 _1137 PP_1138: PP_1138 - branched chain amino acid transporter - ATP binding subunit, at 1,303,376 to 1,304,143 _1138 PP_1139: PP_1139 - branched chain amino acid transporter - permease subunit, at 1,304,140 to 1,305,396 _1139 PP_1140: PP_1140 - branched chain amino acid transporter - permease subunit, at 1,305,393 to 1,306,316 _1140 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -1 0 1 2at 1303.197 kb on + strand, within PP_1137at 1303.197 kb on + strand, within PP_1137at 1303.197 kb on + strand, within PP_1137at 1303.198 kb on - strand, within PP_1137at 1303.198 kb on - strand, within PP_1137at 1303.198 kb on - strand, within PP_1137at 1303.198 kb on - strand, within PP_1137at 1303.377 kb on + strandat 1303.377 kb on + strandat 1303.378 kb on - strandat 1303.378 kb on - strandat 1303.392 kb on + strandat 1303.393 kb on - strandat 1303.393 kb on - strandat 1303.475 kb on - strand, within PP_1138at 1303.696 kb on + strand, within PP_1138at 1303.738 kb on - strand, within PP_1138at 1303.980 kb on + strand, within PP_1138at 1303.980 kb on + strand, within PP_1138at 1303.981 kb on - strand, within PP_1138at 1304.172 kb on + strandat 1304.172 kb on + strandat 1304.601 kb on - strand, within PP_1139at 1304.630 kb on + strand, within PP_1139at 1304.630 kb on + strand, within PP_1139at 1304.630 kb on + strand, within PP_1139at 1304.630 kb on + strand, within PP_1139at 1304.630 kb on + strand, within PP_1139at 1304.630 kb on + strand, within PP_1139at 1304.631 kb on - strand, within PP_1139at 1304.631 kb on - strand, within PP_1139at 1304.631 kb on - strand, within PP_1139at 1304.631 kb on - strand, within PP_1139at 1304.631 kb on - strand, within PP_1139at 1304.631 kb on - strand, within PP_1139at 1304.761 kb on - strand, within PP_1139at 1304.814 kb on - strand, within PP_1139at 1304.814 kb on - strand, within PP_1139at 1304.814 kb on - strand, within PP_1139at 1304.814 kb on - strand, within PP_1139at 1304.814 kb on - strand, within PP_1139at 1304.916 kb on - strand, within PP_1139at 1304.933 kb on + strand, within PP_1139at 1304.933 kb on + strand, within PP_1139at 1304.933 kb on + strand, within PP_1139at 1304.934 kb on - strand, within PP_1139at 1304.934 kb on - strand, within PP_1139at 1304.934 kb on - strand, within PP_1139at 1304.934 kb on - strand, within PP_1139at 1304.939 kb on + strand, within PP_1139at 1304.940 kb on - strand, within PP_1139at 1304.954 kb on + strand, within PP_1139at 1304.955 kb on - strand, within PP_1139at 1304.955 kb on - strand, within PP_1139at 1304.955 kb on - strand, within PP_1139at 1304.955 kb on - strand, within PP_1139at 1304.955 kb on - strand, within PP_1139at 1304.955 kb on - strand, within PP_1139at 1305.004 kb on - strand, within PP_1139at 1305.029 kb on + strand, within PP_1139at 1305.030 kb on - strand, within PP_1139at 1305.086 kb on - strand, within PP_1139at 1305.119 kb on + strand, within PP_1139at 1305.119 kb on + strand, within PP_1139at 1305.119 kb on + strand, within PP_1139at 1305.119 kb on + strand, within PP_1139at 1305.119 kb on + strand, within PP_1139at 1305.120 kb on - strand, within PP_1139at 1305.120 kb on - strand, within PP_1139at 1305.120 kb on - strand, within PP_1139at 1305.120 kb on - strand, within PP_1139at 1305.120 kb on - strand, within PP_1139at 1305.146 kb on + strand, within PP_1139at 1305.146 kb on + strand, within PP_1139at 1305.147 kb on - strand, within PP_1139at 1305.147 kb on - strand, within PP_1139at 1305.147 kb on - strand, within PP_1139at 1305.484 kb on + strandat 1305.485 kb on - strandat 1305.485 kb on - strandat 1305.641 kb on - strand, within PP_1140at 1305.780 kb on + strandat 1305.856 kb on + strand, within PP_1140at 1305.856 kb on + strand, within PP_1140at 1305.856 kb on + strand, within PP_1140at 1305.857 kb on - strand, within PP_1140at 1305.857 kb on - strand, within PP_1140at 1305.857 kb on - strand, within PP_1140at 1305.867 kb on + strand, within PP_1140at 1305.867 kb on + strand, within PP_1140at 1305.867 kb on + strand, within PP_1140at 1306.049 kb on + strand, within PP_1140at 1306.054 kb on + strand, within PP_1140at 1306.054 kb on + strand, within PP_1140at 1306.054 kb on + strand, within PP_1140at 1306.055 kb on - strand, within PP_1140at 1306.055 kb on - strand, within PP_1140at 1306.060 kb on + strand, within PP_1140at 1306.060 kb on + strand, within PP_1140at 1306.060 kb on + strand, within PP_1140at 1306.061 kb on - strand, within PP_1140at 1306.165 kb on + strand, within PP_1140at 1306.165 kb on + strand, within PP_1140at 1306.165 kb on + strand, within PP_1140at 1306.166 kb on - strand, within PP_1140at 1306.166 kb on - strand, within PP_1140at 1306.166 kb on - strand, within PP_1140at 1306.180 kb on + strand, within PP_1140at 1306.180 kb on + strand, within PP_1140at 1306.180 kb on + strand, within PP_1140at 1306.180 kb on + strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.181 kb on - strand, within PP_1140at 1306.222 kb on + strand, within PP_1140at 1306.223 kb on - strand, within PP_1140at 1306.223 kb on - strand, within PP_1140at 1306.255 kb on + strandat 1306.255 kb on + strandat 1306.255 kb on + strandat 1306.255 kb on + strandat 1306.255 kb on + strandat 1306.255 kb on + strandat 1306.256 kb on - strandat 1306.256 kb on - strandat 1306.256 kb on - strandat 1306.256 kb on - strandat 1306.256 kb on - strandat 1306.256 kb on - strandat 1306.256 kb on - strandat 1306.303 kb on + strandat 1306.304 kb on - strandat 1306.317 kb on + strandat 1306.318 kb on - strandat 1306.389 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB
remove
1,303,197 + PP_1137 0.75 +1.1
1,303,197 + PP_1137 0.75 +0.5
1,303,197 + PP_1137 0.75 -0.2
1,303,198 - PP_1137 0.75 -0.2
1,303,198 - PP_1137 0.75 +0.1
1,303,198 - PP_1137 0.75 +0.6
1,303,198 - PP_1137 0.75 +0.6
1,303,377 + +1.5
1,303,377 + -0.0
1,303,378 - -0.4
1,303,378 - +0.1
1,303,392 + -0.0
1,303,393 - +0.9
1,303,393 - +0.1
1,303,475 - PP_1138 0.13 +0.1
1,303,696 + PP_1138 0.42 -0.1
1,303,738 - PP_1138 0.47 -0.1
1,303,980 + PP_1138 0.79 -0.1
1,303,980 + PP_1138 0.79 +0.6
1,303,981 - PP_1138 0.79 +0.5
1,304,172 + +0.4
1,304,172 + -0.2
1,304,601 - PP_1139 0.37 -0.5
1,304,630 + PP_1139 0.39 -0.9
1,304,630 + PP_1139 0.39 -0.0
1,304,630 + PP_1139 0.39 +0.8
1,304,630 + PP_1139 0.39 -0.1
1,304,630 + PP_1139 0.39 +0.4
1,304,630 + PP_1139 0.39 +0.4
1,304,631 - PP_1139 0.39 +0.6
1,304,631 - PP_1139 0.39 +0.4
1,304,631 - PP_1139 0.39 -0.3
1,304,631 - PP_1139 0.39 +0.1
1,304,631 - PP_1139 0.39 +0.1
1,304,631 - PP_1139 0.39 +0.3
1,304,761 - PP_1139 0.49 +0.4
1,304,814 - PP_1139 0.54 +0.6
1,304,814 - PP_1139 0.54 +0.3
1,304,814 - PP_1139 0.54 +0.8
1,304,814 - PP_1139 0.54 +0.5
1,304,814 - PP_1139 0.54 +0.7
1,304,916 - PP_1139 0.62 +1.1
1,304,933 + PP_1139 0.63 +0.1
1,304,933 + PP_1139 0.63 +0.5
1,304,933 + PP_1139 0.63 -0.6
1,304,934 - PP_1139 0.63 +0.8
1,304,934 - PP_1139 0.63 +0.8
1,304,934 - PP_1139 0.63 +0.2
1,304,934 - PP_1139 0.63 +0.8
1,304,939 + PP_1139 0.64 +0.4
1,304,940 - PP_1139 0.64 +0.1
1,304,954 + PP_1139 0.65 +0.0
1,304,955 - PP_1139 0.65 +0.7
1,304,955 - PP_1139 0.65 +1.9
1,304,955 - PP_1139 0.65 +0.0
1,304,955 - PP_1139 0.65 +0.5
1,304,955 - PP_1139 0.65 +0.4
1,304,955 - PP_1139 0.65 -0.3
1,305,004 - PP_1139 0.69 +0.3
1,305,029 + PP_1139 0.71 +0.1
1,305,030 - PP_1139 0.71 -0.0
1,305,086 - PP_1139 0.75 +0.2
1,305,119 + PP_1139 0.78 +0.8
1,305,119 + PP_1139 0.78 +0.4
1,305,119 + PP_1139 0.78 +0.6
1,305,119 + PP_1139 0.78 +0.7
1,305,119 + PP_1139 0.78 +0.6
1,305,120 - PP_1139 0.78 +0.2
1,305,120 - PP_1139 0.78 +0.8
1,305,120 - PP_1139 0.78 +0.5
1,305,120 - PP_1139 0.78 +0.3
1,305,120 - PP_1139 0.78 -0.5
1,305,146 + PP_1139 0.80 +0.5
1,305,146 + PP_1139 0.80 +1.2
1,305,147 - PP_1139 0.80 -0.2
1,305,147 - PP_1139 0.80 +0.2
1,305,147 - PP_1139 0.80 -0.1
1,305,484 + -0.1
1,305,485 - +1.1
1,305,485 - -0.0
1,305,641 - PP_1140 0.27 -0.1
1,305,780 + +1.8
1,305,856 + PP_1140 0.50 -0.6
1,305,856 + PP_1140 0.50 +0.3
1,305,856 + PP_1140 0.50 +0.2
1,305,857 - PP_1140 0.50 -0.5
1,305,857 - PP_1140 0.50 +1.0
1,305,857 - PP_1140 0.50 +0.2
1,305,867 + PP_1140 0.51 -0.5
1,305,867 + PP_1140 0.51 -0.0
1,305,867 + PP_1140 0.51 +0.6
1,306,049 + PP_1140 0.71 +0.5
1,306,054 + PP_1140 0.72 +0.5
1,306,054 + PP_1140 0.72 +0.7
1,306,054 + PP_1140 0.72 +0.4
1,306,055 - PP_1140 0.72 +0.4
1,306,055 - PP_1140 0.72 +0.8
1,306,060 + PP_1140 0.72 +1.2
1,306,060 + PP_1140 0.72 -0.2
1,306,060 + PP_1140 0.72 +0.4
1,306,061 - PP_1140 0.72 +0.4
1,306,165 + PP_1140 0.84 +0.4
1,306,165 + PP_1140 0.84 +0.0
1,306,165 + PP_1140 0.84 -0.2
1,306,166 - PP_1140 0.84 +0.7
1,306,166 - PP_1140 0.84 +1.3
1,306,166 - PP_1140 0.84 +0.2
1,306,180 + PP_1140 0.85 +0.5
1,306,180 + PP_1140 0.85 +0.1
1,306,180 + PP_1140 0.85 +0.6
1,306,180 + PP_1140 0.85 +0.5
1,306,181 - PP_1140 0.85 +0.6
1,306,181 - PP_1140 0.85 +0.5
1,306,181 - PP_1140 0.85 +0.2
1,306,181 - PP_1140 0.85 -0.4
1,306,181 - PP_1140 0.85 +0.0
1,306,181 - PP_1140 0.85 +0.9
1,306,181 - PP_1140 0.85 +0.2
1,306,181 - PP_1140 0.85 +0.4
1,306,222 + PP_1140 0.90 +0.2
1,306,223 - PP_1140 0.90 +0.5
1,306,223 - PP_1140 0.90 +0.3
1,306,255 + +0.6
1,306,255 + +0.2
1,306,255 + -0.0
1,306,255 + +1.0
1,306,255 + +0.2
1,306,255 + -0.1
1,306,256 - +0.7
1,306,256 - +0.3
1,306,256 - +0.4
1,306,256 - +0.1
1,306,256 - -0.3
1,306,256 - +0.7
1,306,256 - -0.2
1,306,303 + +0.9
1,306,304 - -0.3
1,306,317 + +0.8
1,306,318 - +0.1
1,306,389 + -0.1

Or see this region's nucleotide sequence