Strain Fitness in Pseudomonas putida KT2440 around PP_0522

Experiment: Soil Extract with Trisodium citrate 10 mM; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0520 and PP_0521 are separated by 16 nucleotidesPP_0521 and PP_0522 are separated by 180 nucleotidesPP_0522 and PP_0523 overlap by 4 nucleotidesPP_0523 and PP_0524 overlap by 1 nucleotides PP_0520: PP_0520 - phosphatidylglycerophosphatase A, at 605,653 to 606,156 _0520 PP_0521: PP_0521 - conserved exported protein of unknown function, at 606,173 to 606,916 _0521 PP_0522: PP_0522 - GTP cyclohydrolase-2, at 607,097 to 607,714 _0522 PP_0523: PP_0523 - conserved membrane protein of unknown function, at 607,711 to 608,130 _0523 PP_0524: PP_0524 - putative Periplasmic cobalamin-binding protein HutB, at 608,130 to 608,942 _0524 Position (kb) 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 606.180 kb on + strandat 606.181 kb on - strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.190 kb on - strandat 606.190 kb on - strandat 606.211 kb on + strandat 606.211 kb on + strandat 606.212 kb on - strandat 606.212 kb on - strandat 606.284 kb on + strand, within PP_0521at 606.284 kb on + strand, within PP_0521at 606.284 kb on + strand, within PP_0521at 606.285 kb on - strand, within PP_0521at 606.434 kb on + strand, within PP_0521at 606.435 kb on - strand, within PP_0521at 606.462 kb on - strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.526 kb on + strand, within PP_0521at 606.548 kb on + strand, within PP_0521at 606.572 kb on + strand, within PP_0521at 606.587 kb on + strand, within PP_0521at 606.587 kb on + strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.669 kb on - strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.672 kb on - strand, within PP_0521at 606.672 kb on - strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.699 kb on - strand, within PP_0521at 606.699 kb on - strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.782 kb on - strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.838 kb on - strand, within PP_0521at 606.841 kb on + strand, within PP_0521at 606.884 kb on + strandat 606.924 kb on + strandat 606.925 kb on - strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.936 kb on + strandat 606.937 kb on - strandat 606.983 kb on + strandat 606.986 kb on + strandat 606.986 kb on + strandat 606.987 kb on - strandat 607.008 kb on + strandat 607.018 kb on + strandat 607.018 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.021 kb on - strandat 607.051 kb on + strandat 607.080 kb on + strandat 607.080 kb on + strandat 607.900 kb on + strandat 607.900 kb on + strand, within PP_0523at 607.901 kb on - strand, within PP_0523at 607.914 kb on + strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.939 kb on - strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.997 kb on + strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.998 kb on - strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 607.999 kb on + strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.000 kb on - strand, within PP_0523at 608.090 kb on + strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.091 kb on - strandat 608.098 kb on + strandat 608.099 kb on - strandat 608.099 kb on - strandat 608.104 kb on + strandat 608.140 kb on + strandat 608.140 kb on + strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.141 kb on - strandat 608.173 kb on + strandat 608.174 kb on - strandat 608.174 kb on - strandat 608.191 kb on + strandat 608.191 kb on + strandat 608.191 kb on + strandat 608.192 kb on - strandat 608.529 kb on + strand, within PP_0524at 608.574 kb on + strand, within PP_0524at 608.604 kb on + strand, within PP_0524at 608.629 kb on - strand, within PP_0524at 608.629 kb on - strand, within PP_0524

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil Extract with Trisodium citrate 10 mM; 30C
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606,180 + +0.5
606,181 - +0.3
606,189 + +0.4
606,189 + -0.1
606,189 + -1.6
606,189 + +0.2
606,190 - -1.0
606,190 - +0.4
606,211 + +0.4
606,211 + +0.1
606,212 - +0.1
606,212 - +0.0
606,284 + PP_0521 0.15 -0.3
606,284 + PP_0521 0.15 -0.1
606,284 + PP_0521 0.15 +0.2
606,285 - PP_0521 0.15 -0.6
606,434 + PP_0521 0.35 -0.1
606,435 - PP_0521 0.35 -0.1
606,462 - PP_0521 0.39 +0.3
606,490 + PP_0521 0.43 +0.2
606,490 + PP_0521 0.43 -0.1
606,490 + PP_0521 0.43 -0.3
606,490 + PP_0521 0.43 +0.8
606,490 + PP_0521 0.43 +0.6
606,490 + PP_0521 0.43 -0.7
606,491 - PP_0521 0.43 +0.8
606,491 - PP_0521 0.43 -0.6
606,491 - PP_0521 0.43 +0.2
606,491 - PP_0521 0.43 +0.2
606,491 - PP_0521 0.43 +0.5
606,491 - PP_0521 0.43 -0.7
606,491 - PP_0521 0.43 +0.3
606,491 - PP_0521 0.43 -0.2
606,491 - PP_0521 0.43 -0.5
606,491 - PP_0521 0.43 +0.4
606,491 - PP_0521 0.43 -0.4
606,491 - PP_0521 0.43 +0.2
606,491 - PP_0521 0.43 +0.2
606,491 - PP_0521 0.43 -0.5
606,491 - PP_0521 0.43 -0.0
606,491 - PP_0521 0.43 -1.0
606,491 - PP_0521 0.43 +0.0
606,494 + PP_0521 0.43 -0.3
606,494 + PP_0521 0.43 -0.8
606,494 + PP_0521 0.43 +0.0
606,494 + PP_0521 0.43 +0.6
606,494 + PP_0521 0.43 +0.2
606,494 + PP_0521 0.43 +0.0
606,494 + PP_0521 0.43 -1.0
606,495 - PP_0521 0.43 -0.8
606,495 - PP_0521 0.43 +0.3
606,495 - PP_0521 0.43 -0.2
606,495 - PP_0521 0.43 +0.4
606,495 - PP_0521 0.43 +0.5
606,495 - PP_0521 0.43 -0.1
606,526 + PP_0521 0.47 -0.5
606,548 + PP_0521 0.50 +0.7
606,572 + PP_0521 0.54 +0.7
606,587 + PP_0521 0.56 +0.1
606,587 + PP_0521 0.56 -0.3
606,588 - PP_0521 0.56 -0.2
606,588 - PP_0521 0.56 -0.6
606,588 - PP_0521 0.56 -0.3
606,588 - PP_0521 0.56 -0.8
606,588 - PP_0521 0.56 +0.5
606,668 + PP_0521 0.67 -0.4
606,668 + PP_0521 0.67 +0.3
606,668 + PP_0521 0.67 -0.1
606,668 + PP_0521 0.67 +0.3
606,669 - PP_0521 0.67 +0.2
606,671 + PP_0521 0.67 -0.4
606,671 + PP_0521 0.67 -0.8
606,671 + PP_0521 0.67 +0.1
606,671 + PP_0521 0.67 +0.5
606,672 - PP_0521 0.67 -0.0
606,672 - PP_0521 0.67 -2.2
606,698 + PP_0521 0.71 +0.6
606,698 + PP_0521 0.71 +0.3
606,698 + PP_0521 0.71 +0.5
606,699 - PP_0521 0.71 +0.1
606,699 - PP_0521 0.71 +0.2
606,764 + PP_0521 0.79 -0.9
606,764 + PP_0521 0.79 +0.4
606,765 - PP_0521 0.80 -0.4
606,765 - PP_0521 0.80 +0.2
606,765 - PP_0521 0.80 -1.9
606,782 - PP_0521 0.82 -0.1
606,837 + PP_0521 0.89 -0.6
606,837 + PP_0521 0.89 -0.1
606,837 + PP_0521 0.89 +0.2
606,837 + PP_0521 0.89 -0.3
606,838 - PP_0521 0.89 -0.8
606,841 + PP_0521 0.90 +0.0
606,884 + -0.9
606,924 + +0.2
606,925 - -0.0
606,934 + -0.4
606,934 + -0.2
606,934 + -0.1
606,934 + +0.3
606,934 + -0.2
606,934 + +0.0
606,934 + -0.1
606,935 - +0.4
606,935 - -1.0
606,935 - -0.8
606,936 + +0.6
606,937 - +0.6
606,983 + -0.4
606,986 + -0.1
606,986 + +0.0
606,987 - +0.7
607,008 + -1.0
607,018 + +0.8
607,018 + +0.6
607,020 + -0.1
607,020 + +0.6
607,020 + +0.4
607,020 + -0.9
607,020 + +0.0
607,020 + -0.3
607,020 + -0.4
607,021 - +0.6
607,051 + +0.5
607,080 + +0.3
607,080 + -0.6
607,900 + +0.4
607,900 + PP_0523 0.45 -0.5
607,901 - PP_0523 0.45 +0.2
607,914 + PP_0523 0.48 -0.1
607,915 - PP_0523 0.49 -0.5
607,915 - PP_0523 0.49 +0.4
607,915 - PP_0523 0.49 -0.0
607,915 - PP_0523 0.49 +0.0
607,915 - PP_0523 0.49 +2.2
607,915 - PP_0523 0.49 +0.3
607,939 - PP_0523 0.54 -0.6
607,997 + PP_0523 0.68 +0.5
607,997 + PP_0523 0.68 +0.7
607,997 + PP_0523 0.68 +0.2
607,997 + PP_0523 0.68 +0.6
607,997 + PP_0523 0.68 -0.2
607,997 + PP_0523 0.68 -0.3
607,997 + PP_0523 0.68 +0.2
607,997 + PP_0523 0.68 -0.3
607,997 + PP_0523 0.68 +0.4
607,997 + PP_0523 0.68 +0.3
607,997 + PP_0523 0.68 +0.7
607,997 + PP_0523 0.68 +1.2
607,997 + PP_0523 0.68 +0.2
607,998 - PP_0523 0.68 +0.1
607,998 - PP_0523 0.68 -0.6
607,998 - PP_0523 0.68 +0.2
607,998 - PP_0523 0.68 -0.9
607,998 - PP_0523 0.68 +0.5
607,998 - PP_0523 0.68 -0.4
607,998 - PP_0523 0.68 -0.4
607,998 - PP_0523 0.68 +0.5
607,998 - PP_0523 0.68 -0.6
607,998 - PP_0523 0.68 -0.7
607,998 - PP_0523 0.68 +0.2
607,998 - PP_0523 0.68 +0.1
607,998 - PP_0523 0.68 -0.3
607,999 + PP_0523 0.69 +0.2
607,999 + PP_0523 0.69 +0.4
607,999 + PP_0523 0.69 -0.0
607,999 + PP_0523 0.69 -0.1
607,999 + PP_0523 0.69 +0.4
607,999 + PP_0523 0.69 +0.5
607,999 + PP_0523 0.69 -0.6
607,999 + PP_0523 0.69 -0.0
607,999 + PP_0523 0.69 -0.3
607,999 + PP_0523 0.69 -0.6
608,000 - PP_0523 0.69 +0.0
608,000 - PP_0523 0.69 +0.6
608,000 - PP_0523 0.69 +0.8
608,000 - PP_0523 0.69 -0.0
608,090 + +0.4
608,091 - -0.9
608,091 - +0.2
608,091 - +0.8
608,091 - +0.1
608,091 - +0.2
608,098 + -0.3
608,099 - -0.1
608,099 - +0.0
608,104 + -0.2
608,140 + -0.3
608,140 + -0.5
608,141 - +0.0
608,141 - -0.6
608,141 - -1.5
608,141 - -0.1
608,173 + +0.5
608,174 - +0.7
608,174 - -0.3
608,191 + -0.1
608,191 + -0.2
608,191 + +0.5
608,192 - -0.6
608,529 + PP_0524 0.49 +0.6
608,574 + PP_0524 0.55 -0.2
608,604 + PP_0524 0.58 -0.2
608,629 - PP_0524 0.61 +0.7
608,629 - PP_0524 0.61 +0.0

Or see this region's nucleotide sequence