Strain Fitness in Pseudomonas simiae WCS417 around PS417_00280

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00270 and PS417_00275 are separated by 77 nucleotidesPS417_00275 and PS417_00280 are separated by 223 nucleotidesPS417_00280 and PS417_00285 are separated by 227 nucleotides PS417_00270: PS417_00270 - alcohol dehydrogenase, at 52,488 to 53,750 _00270 PS417_00275: PS417_00275 - hypothetical protein, at 53,828 to 54,085 _00275 PS417_00280: PS417_00280 - radical SAM protein, at 54,309 to 55,367 _00280 PS417_00285: PS417_00285 - carbonate dehydratase, at 55,595 to 56,326 _00285 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 53.370 kb on + strand, within PS417_00270at 53.371 kb on - strand, within PS417_00270at 53.371 kb on - strand, within PS417_00270at 53.371 kb on - strand, within PS417_00270at 53.433 kb on + strand, within PS417_00270at 53.433 kb on + strand, within PS417_00270at 53.434 kb on - strand, within PS417_00270at 53.434 kb on - strand, within PS417_00270at 53.434 kb on - strand, within PS417_00270at 53.550 kb on - strand, within PS417_00270at 53.568 kb on - strand, within PS417_00270at 53.684 kb on + strandat 53.684 kb on + strandat 53.722 kb on + strandat 53.722 kb on + strandat 53.778 kb on - strandat 53.793 kb on - strandat 53.820 kb on + strandat 53.949 kb on + strand, within PS417_00275at 53.949 kb on + strand, within PS417_00275at 53.949 kb on + strand, within PS417_00275at 53.949 kb on + strand, within PS417_00275at 53.979 kb on + strand, within PS417_00275at 53.979 kb on + strand, within PS417_00275at 53.980 kb on - strand, within PS417_00275at 53.980 kb on - strand, within PS417_00275at 54.085 kb on + strandat 54.085 kb on + strandat 54.085 kb on + strandat 54.086 kb on - strandat 54.087 kb on + strandat 54.110 kb on + strandat 54.110 kb on + strandat 54.129 kb on - strandat 54.191 kb on - strandat 54.194 kb on + strandat 54.195 kb on - strandat 54.195 kb on - strandat 54.197 kb on + strandat 54.198 kb on - strandat 54.282 kb on - strandat 54.302 kb on + strandat 54.303 kb on - strandat 54.543 kb on + strand, within PS417_00280at 54.543 kb on + strandat 54.543 kb on + strand, within PS417_00280at 54.544 kb on - strand, within PS417_00280at 54.544 kb on - strand, within PS417_00280at 54.544 kb on - strand, within PS417_00280at 54.549 kb on + strand, within PS417_00280at 54.550 kb on - strand, within PS417_00280at 54.550 kb on - strand, within PS417_00280at 54.571 kb on - strand, within PS417_00280at 54.579 kb on - strand, within PS417_00280at 54.579 kb on - strand, within PS417_00280at 54.666 kb on + strand, within PS417_00280at 54.666 kb on + strand, within PS417_00280at 54.666 kb on + strand, within PS417_00280at 54.667 kb on - strand, within PS417_00280at 54.667 kb on - strand, within PS417_00280at 54.730 kb on - strand, within PS417_00280at 55.077 kb on + strand, within PS417_00280at 55.077 kb on + strand, within PS417_00280at 55.200 kb on + strand, within PS417_00280at 55.200 kb on + strand, within PS417_00280at 55.201 kb on - strand, within PS417_00280at 55.201 kb on - strandat 55.272 kb on - strandat 55.314 kb on - strandat 55.365 kb on + strandat 55.525 kb on + strandat 55.526 kb on - strandat 55.526 kb on - strandat 55.526 kb on - strandat 55.577 kb on + strandat 55.610 kb on - strandat 55.939 kb on - strand, within PS417_00285at 55.939 kb on - strand, within PS417_00285at 56.196 kb on + strand, within PS417_00285at 56.196 kb on + strand, within PS417_00285at 56.201 kb on - strand, within PS417_00285at 56.201 kb on - strand, within PS417_00285at 56.201 kb on - strand, within PS417_00285at 56.216 kb on + strand, within PS417_00285at 56.216 kb on + strand, within PS417_00285at 56.216 kb on + strand, within PS417_00285at 56.216 kb on + strand, within PS417_00285at 56.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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53,370 + PS417_00270 0.70 -0.1
53,371 - PS417_00270 0.70 -0.2
53,371 - PS417_00270 0.70 +1.0
53,371 - PS417_00270 0.70 +0.3
53,433 + PS417_00270 0.75 +0.2
53,433 + PS417_00270 0.75 -1.2
53,434 - PS417_00270 0.75 +1.9
53,434 - PS417_00270 0.75 -0.1
53,434 - PS417_00270 0.75 +0.5
53,550 - PS417_00270 0.84 -0.1
53,568 - PS417_00270 0.86 -0.8
53,684 + -0.7
53,684 + -0.4
53,722 + +0.2
53,722 + +1.0
53,778 - -0.1
53,793 - -0.1
53,820 + +0.1
53,949 + PS417_00275 0.47 -0.4
53,949 + PS417_00275 0.47 -0.1
53,949 + PS417_00275 0.47 +0.3
53,949 + PS417_00275 0.47 +0.5
53,979 + PS417_00275 0.59 +0.2
53,979 + PS417_00275 0.59 -0.1
53,980 - PS417_00275 0.59 -0.6
53,980 - PS417_00275 0.59 -1.9
54,085 + -0.9
54,085 + -0.7
54,085 + -0.4
54,086 - -0.8
54,087 + -0.5
54,110 + -1.4
54,110 + +0.1
54,129 - +0.9
54,191 - -1.0
54,194 + -0.2
54,195 - -1.6
54,195 - -0.9
54,197 + -0.5
54,198 - -1.6
54,282 - +0.0
54,302 + +0.1
54,303 - +0.1
54,543 + PS417_00280 0.22 -0.2
54,543 + -1.5
54,543 + PS417_00280 0.22 +0.1
54,544 - PS417_00280 0.22 +0.1
54,544 - PS417_00280 0.22 -0.9
54,544 - PS417_00280 0.22 -0.5
54,549 + PS417_00280 0.23 -0.4
54,550 - PS417_00280 0.23 -0.2
54,550 - PS417_00280 0.23 -0.7
54,571 - PS417_00280 0.25 +0.4
54,579 - PS417_00280 0.25 +0.9
54,579 - PS417_00280 0.25 +0.3
54,666 + PS417_00280 0.34 -0.1
54,666 + PS417_00280 0.34 +0.0
54,666 + PS417_00280 0.34 +0.4
54,667 - PS417_00280 0.34 -0.6
54,667 - PS417_00280 0.34 -0.5
54,730 - PS417_00280 0.40 +0.1
55,077 + PS417_00280 0.73 +0.0
55,077 + PS417_00280 0.73 -0.2
55,200 + PS417_00280 0.84 -0.4
55,200 + PS417_00280 0.84 +0.0
55,201 - PS417_00280 0.84 -0.6
55,201 - -0.5
55,272 - +0.0
55,314 - -0.2
55,365 + +0.2
55,525 + -0.2
55,526 - +0.0
55,526 - -0.6
55,526 - -0.5
55,577 + +0.5
55,610 - +0.8
55,939 - PS417_00285 0.47 +1.2
55,939 - PS417_00285 0.47 +0.2
56,196 + PS417_00285 0.82 -0.3
56,196 + PS417_00285 0.82 -0.5
56,201 - PS417_00285 0.83 -0.1
56,201 - PS417_00285 0.83 +0.4
56,201 - PS417_00285 0.83 -0.5
56,216 + PS417_00285 0.85 -0.5
56,216 + PS417_00285 0.85 -1.8
56,216 + PS417_00285 0.85 -1.2
56,216 + PS417_00285 0.85 -0.8
56,324 + +1.0

Or see this region's nucleotide sequence