Strain Fitness in Pseudomonas simiae WCS417 around PS417_18105
Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source L-Citrulline 5 mM |
---|---|---|---|---|---|
remove | |||||
3,942,646 | + | PS417_18100 | 0.75 | +0.3 | |
3,942,646 | + | PS417_18100 | 0.75 | +1.0 | |
3,942,739 | - | PS417_18100 | 0.85 | +1.9 | |
3,942,739 | - | PS417_18100 | 0.85 | +0.4 | |
3,942,739 | - | PS417_18100 | 0.85 | -0.4 | |
3,942,739 | - | PS417_18100 | 0.85 | +1.0 | |
3,942,746 | - | PS417_18100 | 0.85 | +0.4 | |
3,942,823 | - | -0.3 | |||
3,942,905 | - | -0.1 | |||
3,943,215 | - | PS417_18105 | 0.35 | -0.9 | |
3,943,457 | + | PS417_18105 | 0.61 | -0.2 | |
3,943,871 | + | +0.3 | |||
3,943,957 | - | -0.1 | |||
3,943,957 | - | +1.5 | |||
3,943,957 | - | +0.1 | |||
3,943,969 | - | +0.3 | |||
3,944,039 | - | -0.2 | |||
3,944,070 | - | -0.7 | |||
3,944,131 | + | +2.4 | |||
3,944,263 | + | -0.1 | |||
3,944,351 | - | PS417_18110 | 0.13 | +0.4 | |
3,944,388 | - | PS417_18110 | 0.15 | -0.6 | |
3,944,422 | + | PS417_18110 | 0.16 | +0.9 | |
3,944,422 | + | PS417_18110 | 0.16 | -0.4 | |
3,944,422 | + | PS417_18110 | 0.16 | -0.4 | |
3,944,423 | - | PS417_18110 | 0.16 | -0.5 | |
3,944,599 | + | PS417_18110 | 0.24 | -1.8 | |
3,944,705 | - | PS417_18110 | 0.28 | -0.5 | |
3,944,705 | - | PS417_18110 | 0.28 | +0.1 | |
3,944,705 | - | PS417_18110 | 0.28 | -0.2 | |
3,944,705 | - | PS417_18110 | 0.28 | -1.1 |
Or see this region's nucleotide sequence