Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17590 and PS417_17595 are separated by 72 nucleotides PS417_17595 and PS417_17600 overlap by 4 nucleotides PS417_17600 and PS417_17605 are separated by 3 nucleotides
PS417_17590: PS417_17590 - ABC transporter substrate-binding protein, at 3,840,722 to 3,841,498
_17590
PS417_17595: PS417_17595 - amino acid ABC transporter permease, at 3,841,571 to 3,842,272
_17595
PS417_17600: PS417_17600 - amino acid ABC transporter permease, at 3,842,269 to 3,842,982
_17600
PS417_17605: PS417_17605 - amino acid transporter, at 3,842,986 to 3,843,816
_17605
Position (kb)
3841
3842
3843 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3840.701 kb on + strand at 3840.708 kb on + strand at 3840.711 kb on - strand at 3841.057 kb on + strand, within PS417_17590 at 3841.223 kb on + strand, within PS417_17590 at 3841.223 kb on + strand, within PS417_17590 at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.446 kb on - strand at 3841.467 kb on - strand at 3841.487 kb on + strand at 3841.487 kb on + strand at 3841.739 kb on + strand, within PS417_17595 at 3841.740 kb on - strand, within PS417_17595 at 3841.844 kb on + strand, within PS417_17595 at 3841.845 kb on - strand, within PS417_17595 at 3841.845 kb on - strand, within PS417_17595 at 3841.905 kb on - strand, within PS417_17595 at 3842.147 kb on - strand, within PS417_17595 at 3842.160 kb on - strand, within PS417_17595 at 3842.240 kb on + strand at 3842.302 kb on + strand at 3842.303 kb on - strand at 3842.452 kb on + strand, within PS417_17600 at 3842.452 kb on + strand, within PS417_17600 at 3842.453 kb on - strand, within PS417_17600 at 3842.453 kb on - strand, within PS417_17600 at 3842.458 kb on + strand, within PS417_17600 at 3842.458 kb on + strand, within PS417_17600 at 3842.482 kb on + strand, within PS417_17600 at 3842.483 kb on - strand, within PS417_17600 at 3842.483 kb on - strand, within PS417_17600 at 3842.484 kb on + strand, within PS417_17600 at 3842.484 kb on + strand at 3842.485 kb on - strand, within PS417_17600 at 3842.515 kb on + strand, within PS417_17600 at 3842.515 kb on + strand, within PS417_17600 at 3842.515 kb on + strand at 3842.615 kb on - strand, within PS417_17600 at 3842.896 kb on + strand, within PS417_17600 at 3842.896 kb on + strand, within PS417_17600 at 3842.897 kb on - strand, within PS417_17600 at 3842.897 kb on - strand, within PS417_17600
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 3,840,701 + -0.1 3,840,708 + -1.1 3,840,711 - -1.0 3,841,057 + PS417_17590 0.43 -1.3 3,841,223 + PS417_17590 0.64 -2.3 3,841,223 + PS417_17590 0.64 +0.3 3,841,445 + -0.3 3,841,445 + -1.5 3,841,445 + -1.1 3,841,445 + +0.3 3,841,446 - -0.3 3,841,467 - -0.4 3,841,487 + -0.6 3,841,487 + -2.0 3,841,739 + PS417_17595 0.24 -1.3 3,841,740 - PS417_17595 0.24 -4.2 3,841,844 + PS417_17595 0.39 -3.1 3,841,845 - PS417_17595 0.39 -2.3 3,841,845 - PS417_17595 0.39 -3.8 3,841,905 - PS417_17595 0.48 -1.2 3,842,147 - PS417_17595 0.82 -2.1 3,842,160 - PS417_17595 0.84 -3.4 3,842,240 + -2.5 3,842,302 + -1.4 3,842,303 - -1.8 3,842,452 + PS417_17600 0.26 -1.9 3,842,452 + PS417_17600 0.26 -0.1 3,842,453 - PS417_17600 0.26 -2.0 3,842,453 - PS417_17600 0.26 -1.5 3,842,458 + PS417_17600 0.26 -2.2 3,842,458 + PS417_17600 0.26 -0.9 3,842,482 + PS417_17600 0.30 -1.9 3,842,483 - PS417_17600 0.30 -2.5 3,842,483 - PS417_17600 0.30 -1.9 3,842,484 + PS417_17600 0.30 -2.1 3,842,484 + -1.0 3,842,485 - PS417_17600 0.30 -2.1 3,842,515 + PS417_17600 0.34 -2.6 3,842,515 + PS417_17600 0.34 -2.1 3,842,515 + +0.3 3,842,615 - PS417_17600 0.48 -1.8 3,842,896 + PS417_17600 0.88 +0.1 3,842,896 + PS417_17600 0.88 -1.3 3,842,897 - PS417_17600 0.88 -2.0 3,842,897 - PS417_17600 0.88 -1.5
Or see this region's nucleotide sequence