Strain Fitness in Pseudomonas simiae WCS417 around PS417_17585
Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source L-Citrulline 5 mM |
---|---|---|---|---|---|
remove | |||||
3,838,630 | - | PS417_17580 | 0.15 | -2.6 | |
3,838,630 | - | PS417_17580 | 0.15 | -2.6 | |
3,838,630 | - | PS417_17580 | 0.15 | -4.9 | |
3,838,930 | - | PS417_17580 | 0.48 | -2.0 | |
3,839,324 | - | -2.8 | |||
3,839,464 | + | -1.0 | |||
3,839,515 | + | -1.2 | |||
3,839,531 | - | -3.5 | |||
3,839,638 | + | PS417_17585 | 0.20 | -3.9 | |
3,839,639 | - | PS417_17585 | 0.20 | -1.3 | |
3,840,312 | - | PS417_17585 | 0.84 | -3.7 | |
3,840,346 | + | PS417_17585 | 0.87 | -2.9 | |
3,840,346 | + | PS417_17585 | 0.87 | -1.7 | |
3,840,701 | + | -0.1 | |||
3,840,708 | + | -1.1 | |||
3,840,711 | - | -1.0 | |||
3,841,057 | + | PS417_17590 | 0.43 | -1.3 | |
3,841,223 | + | PS417_17590 | 0.64 | -2.3 | |
3,841,223 | + | PS417_17590 | 0.64 | +0.3 | |
3,841,445 | + | -0.3 | |||
3,841,445 | + | -1.5 | |||
3,841,445 | + | -1.1 | |||
3,841,445 | + | +0.3 | |||
3,841,446 | - | -0.3 | |||
3,841,467 | - | -0.4 |
Or see this region's nucleotide sequence