Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17450 and PS417_17455 are separated by 3 nucleotides PS417_17455 and PS417_17460 are separated by 300 nucleotides PS417_17460 and PS417_17465 are separated by 78 nucleotides PS417_17465 and PS417_17470 are separated by 38 nucleotides
PS417_17450: PS417_17450 - amino acid ABC transporter substrate-binding protein, at 3,812,510 to 3,813,385
_17450
PS417_17455: PS417_17455 - cytochrome C, at 3,813,389 to 3,813,850
_17455
PS417_17460: PS417_17460 - Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) , at 3,814,151 to 3,815,998
_17460
PS417_17465: PS417_17465 - hypothetical protein, at 3,816,077 to 3,816,724
_17465
PS417_17470: PS417_17470 - LuxR family transcriptional regulator, at 3,816,763 to 3,817,389
_17470
Position (kb)
3814
3815
3816 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3813.312 kb on + strand at 3813.312 kb on + strand at 3813.313 kb on - strand at 3813.369 kb on + strand at 3813.391 kb on - strand at 3813.418 kb on - strand at 3813.418 kb on - strand at 3813.474 kb on + strand, within PS417_17455 at 3813.474 kb on + strand, within PS417_17455 at 3813.474 kb on + strand, within PS417_17455 at 3813.475 kb on - strand at 3813.475 kb on - strand, within PS417_17455 at 3813.621 kb on + strand, within PS417_17455 at 3813.622 kb on - strand, within PS417_17455 at 3813.964 kb on + strand at 3813.968 kb on - strand at 3813.990 kb on + strand at 3814.443 kb on - strand, within PS417_17460 at 3814.508 kb on + strand, within PS417_17460 at 3814.590 kb on - strand, within PS417_17460 at 3814.818 kb on + strand, within PS417_17460 at 3814.819 kb on - strand, within PS417_17460 at 3815.003 kb on - strand, within PS417_17460 at 3815.093 kb on + strand, within PS417_17460 at 3815.483 kb on + strand, within PS417_17460 at 3815.507 kb on + strand, within PS417_17460 at 3815.507 kb on + strand, within PS417_17460 at 3815.507 kb on + strand, within PS417_17460 at 3815.508 kb on - strand, within PS417_17460 at 3815.508 kb on - strand, within PS417_17460 at 3815.577 kb on - strand, within PS417_17460 at 3815.609 kb on + strand, within PS417_17460 at 3815.609 kb on + strand, within PS417_17460 at 3815.610 kb on - strand, within PS417_17460 at 3815.610 kb on - strand, within PS417_17460 at 3815.855 kb on + strand at 3815.855 kb on + strand at 3815.856 kb on - strand at 3815.856 kb on - strand at 3816.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 3,813,312 + -0.3 3,813,312 + +0.2 3,813,313 - +0.8 3,813,369 + -2.0 3,813,391 - -0.4 3,813,418 - -1.5 3,813,418 - -2.1 3,813,474 + PS417_17455 0.18 +1.3 3,813,474 + PS417_17455 0.18 -1.6 3,813,474 + PS417_17455 0.18 +0.2 3,813,475 - -1.3 3,813,475 - PS417_17455 0.19 -1.8 3,813,621 + PS417_17455 0.50 -1.7 3,813,622 - PS417_17455 0.50 -1.1 3,813,964 + -2.3 3,813,968 - +0.7 3,813,990 + -2.7 3,814,443 - PS417_17460 0.16 -0.7 3,814,508 + PS417_17460 0.19 +1.1 3,814,590 - PS417_17460 0.24 -1.0 3,814,818 + PS417_17460 0.36 -0.8 3,814,819 - PS417_17460 0.36 -1.9 3,815,003 - PS417_17460 0.46 -1.8 3,815,093 + PS417_17460 0.51 -0.7 3,815,483 + PS417_17460 0.72 -1.8 3,815,507 + PS417_17460 0.73 -1.0 3,815,507 + PS417_17460 0.73 -1.5 3,815,507 + PS417_17460 0.73 -2.8 3,815,508 - PS417_17460 0.73 -1.2 3,815,508 - PS417_17460 0.73 -1.7 3,815,577 - PS417_17460 0.77 +1.3 3,815,609 + PS417_17460 0.79 +0.2 3,815,609 + PS417_17460 0.79 +0.9 3,815,610 - PS417_17460 0.79 -1.2 3,815,610 - PS417_17460 0.79 -1.3 3,815,855 + +0.7 3,815,855 + -2.8 3,815,856 - +1.3 3,815,856 - -1.8 3,816,660 - -1.0
Or see this region's nucleotide sequence