Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0803 and PP_0804 overlap by 4 nucleotides PP_0804 and PP_0805 overlap by 4 nucleotides
PP_0803: PP_0803 - Protein secretion ABC efflux system, membrane fusion protein, at 921,843 to 923,027
_0803
PP_0804: PP_0804 - Protein secretion ABC efflux system, permease and ATP-binding protein, at 923,024 to 925,192
_0804
PP_0805: PP_0805 - Outer membrane efflux protein, at 925,189 to 926,625
_0805
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 922.068 kb on + strand, within PP_0803 at 922.093 kb on + strand, within PP_0803 at 922.094 kb on - strand, within PP_0803 at 922.094 kb on - strand, within PP_0803 at 922.096 kb on - strand, within PP_0803 at 922.096 kb on - strand, within PP_0803 at 922.103 kb on - strand, within PP_0803 at 922.103 kb on - strand, within PP_0803 at 922.108 kb on + strand, within PP_0803 at 922.108 kb on + strand, within PP_0803 at 922.109 kb on - strand, within PP_0803 at 922.400 kb on - strand, within PP_0803 at 922.588 kb on + strand, within PP_0803 at 922.588 kb on + strand, within PP_0803 at 922.589 kb on - strand, within PP_0803 at 922.589 kb on - strand, within PP_0803 at 922.706 kb on - strand, within PP_0803 at 922.999 kb on + strand at 923.000 kb on - strand at 923.158 kb on + strand at 923.682 kb on + strand, within PP_0804 at 923.683 kb on - strand, within PP_0804 at 924.054 kb on + strand, within PP_0804 at 924.054 kb on + strand, within PP_0804 at 924.055 kb on - strand, within PP_0804 at 924.552 kb on + strand, within PP_0804 at 924.553 kb on - strand, within PP_0804 at 924.553 kb on - strand, within PP_0804 at 924.591 kb on + strand, within PP_0804 at 924.591 kb on + strand, within PP_0804 at 924.686 kb on + strand, within PP_0804 at 924.687 kb on - strand, within PP_0804 at 924.726 kb on + strand, within PP_0804 at 924.727 kb on - strand, within PP_0804 at 924.788 kb on - strand, within PP_0804 at 925.049 kb on - strand at 925.061 kb on + strand at 925.061 kb on + strand at 925.262 kb on + strand at 925.262 kb on + strand at 925.262 kb on + strand at 925.263 kb on - strand at 925.328 kb on + strand at 925.328 kb on + strand at 925.375 kb on + strand, within PP_0805 at 925.376 kb on - strand, within PP_0805 at 925.386 kb on - strand, within PP_0805 at 925.386 kb on - strand, within PP_0805 at 925.592 kb on + strand, within PP_0805 at 925.592 kb on + strand at 925.593 kb on - strand, within PP_0805 at 925.593 kb on - strand, within PP_0805 at 925.593 kb on - strand, within PP_0805 at 925.593 kb on - strand, within PP_0805 at 925.616 kb on + strand, within PP_0805 at 925.661 kb on + strand, within PP_0805 at 925.662 kb on - strand, within PP_0805 at 925.677 kb on - strand, within PP_0805 at 925.707 kb on + strand, within PP_0805 at 925.712 kb on + strand, within PP_0805 at 925.713 kb on - strand, within PP_0805 at 925.910 kb on + strand, within PP_0805 at 925.923 kb on - strand, within PP_0805 at 925.969 kb on + strand, within PP_0805 at 925.970 kb on - strand, within PP_0805 at 926.102 kb on + strand, within PP_0805 at 926.102 kb on + strand, within PP_0805 at 926.103 kb on - strand, within PP_0805 at 926.103 kb on - strand, within PP_0805
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 922,068 + PP_0803 0.19 -0.4 922,093 + PP_0803 0.21 -0.5 922,094 - PP_0803 0.21 -1.4 922,094 - PP_0803 0.21 -0.5 922,096 - PP_0803 0.21 -1.3 922,096 - PP_0803 0.21 -0.7 922,103 - PP_0803 0.22 -0.9 922,103 - PP_0803 0.22 +0.5 922,108 + PP_0803 0.22 -1.2 922,108 + PP_0803 0.22 -0.8 922,109 - PP_0803 0.22 -1.0 922,400 - PP_0803 0.47 -0.6 922,588 + PP_0803 0.63 -0.0 922,588 + PP_0803 0.63 -0.7 922,589 - PP_0803 0.63 -0.3 922,589 - PP_0803 0.63 -1.2 922,706 - PP_0803 0.73 +0.7 922,999 + -2.2 923,000 - -0.1 923,158 + -1.2 923,682 + PP_0804 0.30 -0.3 923,683 - PP_0804 0.30 -1.1 924,054 + PP_0804 0.47 -0.8 924,054 + PP_0804 0.47 -0.4 924,055 - PP_0804 0.48 -0.5 924,552 + PP_0804 0.70 -0.9 924,553 - PP_0804 0.70 -1.2 924,553 - PP_0804 0.70 -2.0 924,591 + PP_0804 0.72 -0.8 924,591 + PP_0804 0.72 +0.1 924,686 + PP_0804 0.77 -0.3 924,687 - PP_0804 0.77 -0.9 924,726 + PP_0804 0.78 -0.2 924,727 - PP_0804 0.79 -0.3 924,788 - PP_0804 0.81 -0.7 925,049 - -0.3 925,061 + -0.0 925,061 + -1.1 925,262 + -1.0 925,262 + -0.1 925,262 + -0.0 925,263 - -0.5 925,328 + -0.8 925,328 + -0.0 925,375 + PP_0805 0.13 -0.5 925,376 - PP_0805 0.13 -0.2 925,386 - PP_0805 0.14 -0.8 925,386 - PP_0805 0.14 -0.8 925,592 + PP_0805 0.28 -0.8 925,592 + +0.6 925,593 - PP_0805 0.28 -1.1 925,593 - PP_0805 0.28 -1.0 925,593 - PP_0805 0.28 -0.0 925,593 - PP_0805 0.28 +0.1 925,616 + PP_0805 0.30 -0.5 925,661 + PP_0805 0.33 -1.0 925,662 - PP_0805 0.33 -2.1 925,677 - PP_0805 0.34 -0.4 925,707 + PP_0805 0.36 -0.5 925,712 + PP_0805 0.36 +1.0 925,713 - PP_0805 0.36 -0.4 925,910 + PP_0805 0.50 -0.8 925,923 - PP_0805 0.51 -0.3 925,969 + PP_0805 0.54 -0.9 925,970 - PP_0805 0.54 -0.5 926,102 + PP_0805 0.64 -3.2 926,102 + PP_0805 0.64 -0.8 926,103 - PP_0805 0.64 -0.6 926,103 - PP_0805 0.64 +0.1
Or see this region's nucleotide sequence