Strain Fitness in Pseudomonas simiae WCS417 around PS417_25950

Experiment: Carbon source L-Citrulline 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25940 and PS417_25950 are separated by 332 nucleotidesPS417_25950 and PS417_25955 are separated by 209 nucleotides PS417_25940: PS417_25940 - pyrroloquinoline quinone biosynthesis protein PqqE, at 5,603,285 to 5,604,436 _25940 PS417_25950: PS417_25950 - acetylornithine aminotransferase, at 5,604,769 to 5,606,031 _25950 PS417_25955: PS417_25955 - LysR family transcriptional regulator, at 5,606,241 to 5,607,140 _25955 Position (kb) 5604 5605 5606 5607Strain fitness (log2 ratio) -2 -1 0 1 2at 5603.871 kb on - strand, within PS417_25940at 5604.014 kb on + strand, within PS417_25940at 5604.014 kb on + strand, within PS417_25940at 5604.164 kb on + strand, within PS417_25940at 5604.461 kb on + strandat 5604.461 kb on + strandat 5604.462 kb on - strandat 5604.488 kb on + strandat 5604.488 kb on + strandat 5604.586 kb on - strandat 5604.636 kb on + strandat 5604.636 kb on + strandat 5604.636 kb on + strandat 5604.637 kb on - strandat 5604.637 kb on - strandat 5604.742 kb on + strandat 5604.742 kb on + strandat 5604.946 kb on + strand, within PS417_25950at 5605.059 kb on - strand, within PS417_25950at 5605.086 kb on + strand, within PS417_25950at 5605.158 kb on + strand, within PS417_25950at 5605.194 kb on + strand, within PS417_25950at 5605.208 kb on - strand, within PS417_25950at 5605.274 kb on + strand, within PS417_25950at 5605.382 kb on + strand, within PS417_25950at 5605.691 kb on + strand, within PS417_25950at 5606.031 kb on + strandat 5606.032 kb on - strandat 5606.032 kb on - strandat 5606.045 kb on + strandat 5606.111 kb on - strandat 5606.156 kb on + strandat 5606.157 kb on - strandat 5606.169 kb on + strandat 5606.277 kb on + strandat 5606.294 kb on - strandat 5606.433 kb on + strand, within PS417_25955at 5606.434 kb on - strand, within PS417_25955at 5606.434 kb on - strand, within PS417_25955at 5606.680 kb on - strand, within PS417_25955at 5606.680 kb on - strand, within PS417_25955at 5606.721 kb on + strand, within PS417_25955at 5606.722 kb on - strand, within PS417_25955at 5606.722 kb on - strand, within PS417_25955at 5606.722 kb on - strand, within PS417_25955at 5606.735 kb on - strand, within PS417_25955at 5606.890 kb on + strand, within PS417_25955at 5606.890 kb on + strand, within PS417_25955

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 10 mM
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5,603,871 - PS417_25940 0.51 -0.5
5,604,014 + PS417_25940 0.63 -0.5
5,604,014 + PS417_25940 0.63 -0.6
5,604,164 + PS417_25940 0.76 +0.6
5,604,461 + -0.4
5,604,461 + -0.5
5,604,462 - -0.4
5,604,488 + +0.1
5,604,488 + +1.1
5,604,586 - +0.7
5,604,636 + -0.6
5,604,636 + +0.1
5,604,636 + -0.5
5,604,637 - +0.3
5,604,637 - +1.7
5,604,742 + -0.3
5,604,742 + +0.1
5,604,946 + PS417_25950 0.14 -0.4
5,605,059 - PS417_25950 0.23 -2.5
5,605,086 + PS417_25950 0.25 +0.1
5,605,158 + PS417_25950 0.31 -1.4
5,605,194 + PS417_25950 0.34 -2.0
5,605,208 - PS417_25950 0.35 +0.0
5,605,274 + PS417_25950 0.40 -0.9
5,605,382 + PS417_25950 0.49 +0.5
5,605,691 + PS417_25950 0.73 +0.2
5,606,031 + +2.4
5,606,032 - -0.5
5,606,032 - -0.2
5,606,045 + -0.0
5,606,111 - +0.5
5,606,156 + -1.9
5,606,157 - -0.4
5,606,169 + -0.4
5,606,277 + +0.6
5,606,294 - +0.4
5,606,433 + PS417_25955 0.21 +1.1
5,606,434 - PS417_25955 0.21 +0.7
5,606,434 - PS417_25955 0.21 -0.2
5,606,680 - PS417_25955 0.49 -0.0
5,606,680 - PS417_25955 0.49 -0.5
5,606,721 + PS417_25955 0.53 -0.5
5,606,722 - PS417_25955 0.53 -0.3
5,606,722 - PS417_25955 0.53 -0.8
5,606,722 - PS417_25955 0.53 -1.6
5,606,735 - PS417_25955 0.55 -1.6
5,606,890 + PS417_25955 0.72 +0.3
5,606,890 + PS417_25955 0.72 +0.7

Or see this region's nucleotide sequence