Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27930 and PS417_27935 are separated by 18 nucleotides PS417_27935 and PS417_27940 are separated by 57 nucleotides PS417_27940 and PS417_27945 are separated by 394 nucleotides
PS417_27930: PS417_27930 - type VI secretion protein, at 6,024,797 to 6,026,131
_27930
PS417_27935: PS417_27935 - type VI secretion protein, at 6,026,150 to 6,026,659
_27935
PS417_27940: PS417_27940 - type VI secretion protein, at 6,026,717 to 6,028,051
_27940
PS417_27945: PS417_27945 - type VI secretion protein ImpA, at 6,028,446 to 6,029,465
_27945
Position (kb)
6026
6027
6028
6029 Strain fitness (log2 ratio)
-1
0
1
2 at 6025.761 kb on + strand, within PS417_27930 at 6025.836 kb on + strand, within PS417_27930 at 6026.229 kb on + strand, within PS417_27935 at 6026.678 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.809 kb on + strand at 6026.817 kb on + strand at 6027.202 kb on - strand, within PS417_27940 at 6027.799 kb on + strand, within PS417_27940 at 6027.863 kb on + strand, within PS417_27940 at 6028.028 kb on - strand at 6028.028 kb on - strand at 6028.028 kb on - strand at 6028.028 kb on - strand at 6028.028 kb on - strand at 6028.153 kb on + strand at 6028.174 kb on + strand at 6028.175 kb on - strand at 6028.271 kb on + strand at 6028.271 kb on + strand at 6028.276 kb on + strand at 6028.276 kb on + strand at 6028.276 kb on + strand at 6028.296 kb on - strand at 6028.296 kb on - strand at 6028.298 kb on + strand at 6028.357 kb on + strand at 6028.358 kb on - strand at 6028.358 kb on - strand at 6028.359 kb on + strand at 6028.359 kb on + strand at 6028.360 kb on - strand at 6028.360 kb on - strand at 6028.395 kb on + strand at 6028.395 kb on + strand at 6028.509 kb on + strand at 6028.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 6,025,761 + PS417_27930 0.72 -0.2 6,025,836 + PS417_27930 0.78 -1.7 6,026,229 + PS417_27935 0.15 +0.3 6,026,678 + +1.9 6,026,682 + +1.2 6,026,682 + -0.4 6,026,682 + +0.2 6,026,682 + +2.2 6,026,682 + +0.8 6,026,682 + -0.1 6,026,682 + -0.2 6,026,682 + +0.2 6,026,682 + +0.8 6,026,682 + -0.1 6,026,683 - -0.4 6,026,683 - -0.1 6,026,683 - -0.0 6,026,683 - -0.5 6,026,683 - -0.1 6,026,683 - -0.2 6,026,809 + +0.8 6,026,817 + -0.4 6,027,202 - PS417_27940 0.36 -0.4 6,027,799 + PS417_27940 0.81 +0.4 6,027,863 + PS417_27940 0.86 +0.7 6,028,028 - -0.2 6,028,028 - -0.3 6,028,028 - +0.6 6,028,028 - -1.3 6,028,028 - +0.1 6,028,153 + -0.2 6,028,174 + +0.1 6,028,175 - -0.9 6,028,271 + -0.8 6,028,271 + +0.5 6,028,276 + +1.1 6,028,276 + +0.7 6,028,276 + +0.1 6,028,296 - -0.2 6,028,296 - -1.4 6,028,298 + -0.4 6,028,357 + +0.1 6,028,358 - +0.4 6,028,358 - -0.9 6,028,359 + +0.2 6,028,359 + -0.8 6,028,360 - -0.2 6,028,360 - +0.3 6,028,395 + +0.2 6,028,395 + -0.6 6,028,509 + +0.5 6,028,510 - +0.6
Or see this region's nucleotide sequence