Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27785 and PS417_27790 are separated by 19 nucleotides PS417_27790 and PS417_27795 are separated by 201 nucleotides PS417_27795 and PS417_27800 are separated by 82 nucleotides
PS417_27785: PS417_27785 - phosphoglucomutase, at 5,991,706 to 5,993,103
_27785
PS417_27790: PS417_27790 - acetylglutamate kinase, at 5,993,123 to 5,994,028
_27790
PS417_27795: PS417_27795 - orotate phosphoribosyltransferase, at 5,994,230 to 5,994,874
_27795
PS417_27800: PS417_27800 - exodeoxyribonuclease III, at 5,994,957 to 5,995,736
_27800
Position (kb) 5993
5994
5995 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5992.186 kb on + strand, within PS417_27785 at 5992.616 kb on + strand, within PS417_27785 at 5992.737 kb on + strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.741 kb on + strand, within PS417_27785 at 5992.742 kb on - strand, within PS417_27785 at 5992.821 kb on + strand, within PS417_27785 at 5993.093 kb on + strand at 5993.094 kb on - strand at 5993.195 kb on + strand at 5993.196 kb on - strand at 5993.867 kb on + strand, within PS417_27790 at 5994.027 kb on - strand at 5994.162 kb on - strand at 5994.515 kb on + strand, within PS417_27795 at 5994.891 kb on - strand at 5994.891 kb on - strand at 5994.910 kb on - strand at 5994.910 kb on - strand at 5994.925 kb on - strand at 5994.930 kb on - strand at 5994.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 5,992,186 + PS417_27785 0.34 +3.9 5,992,616 + PS417_27785 0.65 +0.4 5,992,737 + PS417_27785 0.74 +0.4 5,992,738 - PS417_27785 0.74 -0.3 5,992,738 - PS417_27785 0.74 -1.2 5,992,738 - PS417_27785 0.74 -1.4 5,992,741 + PS417_27785 0.74 -0.4 5,992,742 - PS417_27785 0.74 +0.7 5,992,821 + PS417_27785 0.80 +1.1 5,993,093 + -1.2 5,993,094 - +1.7 5,993,195 + +0.9 5,993,196 - -0.0 5,993,867 + PS417_27790 0.82 +0.9 5,994,027 - -0.6 5,994,162 - +1.4 5,994,515 + PS417_27795 0.44 -0.1 5,994,891 - -0.6 5,994,891 - +0.7 5,994,910 - +1.9 5,994,910 - +0.4 5,994,925 - +0.1 5,994,930 - -0.6 5,994,956 + -0.2
Or see this region's nucleotide sequence