Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24025 and PS417_24030 are separated by 9 nucleotides PS417_24030 and PS417_24035 are separated by 28 nucleotides PS417_24035 and PS417_24040 overlap by 4 nucleotides PS417_24040 and PS417_24045 are separated by 105 nucleotides
PS417_24025: PS417_24025 - RNA-binding protein, at 5,201,713 to 5,202,021
_24025
PS417_24030: PS417_24030 - MFS transporter, at 5,202,031 to 5,202,435
_24030
PS417_24035: PS417_24035 - transcription elongation factor GreA, at 5,202,464 to 5,202,940
_24035
PS417_24040: PS417_24040 - carbamoyl phosphate synthase large subunit, at 5,202,937 to 5,206,158
_24040
PS417_24045: PS417_24045 - carbamoyl phosphate synthase small subunit, at 5,206,264 to 5,207,400
_24045
Position (kb) 5202
5203
5204
5205
5206
5207 Strain fitness (log2 ratio) -1
0
1
2 at 5202.006 kb on - strand at 5202.006 kb on - strand at 5202.117 kb on - strand, within PS417_24030 at 5202.125 kb on - strand, within PS417_24030 at 5202.171 kb on - strand, within PS417_24030 at 5202.186 kb on - strand, within PS417_24030 at 5202.773 kb on - strand, within PS417_24035 at 5202.959 kb on - strand at 5202.959 kb on - strand at 5203.952 kb on + strand, within PS417_24040 at 5206.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 5,202,006 - -0.3 5,202,006 - -0.5 5,202,117 - PS417_24030 0.21 +0.8 5,202,125 - PS417_24030 0.23 +0.4 5,202,171 - PS417_24030 0.35 +1.4 5,202,186 - PS417_24030 0.38 -1.4 5,202,773 - PS417_24035 0.65 +0.1 5,202,959 - +2.2 5,202,959 - +0.9 5,203,952 + PS417_24040 0.32 +0.7 5,206,138 + +0.1
Or see this region's nucleotide sequence