Strain Fitness in Pseudomonas simiae WCS417 around PS417_23360

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23355 and PS417_23360 are separated by 343 nucleotidesPS417_23360 and PS417_23365 are separated by 132 nucleotides PS417_23355: PS417_23355 - 4-aminobutyrate aminotransferase, at 5,055,460 to 5,056,710 _23355 PS417_23360: PS417_23360 - hypothetical protein, at 5,057,054 to 5,057,773 _23360 PS417_23365: PS417_23365 - aminotransferase, at 5,057,906 to 5,059,000 _23365 Position (kb) 5057 5058Strain fitness (log2 ratio) -1 0 1 2at 5056.324 kb on + strand, within PS417_23355at 5056.324 kb on + strand, within PS417_23355at 5056.325 kb on - strand, within PS417_23355at 5056.468 kb on + strand, within PS417_23355at 5056.618 kb on - strandat 5056.712 kb on - strandat 5056.776 kb on - strandat 5057.041 kb on + strandat 5057.066 kb on + strandat 5057.067 kb on - strandat 5057.067 kb on - strandat 5057.067 kb on - strandat 5057.283 kb on - strand, within PS417_23360at 5058.161 kb on - strand, within PS417_23365at 5058.411 kb on + strand, within PS417_23365at 5058.411 kb on + strand, within PS417_23365at 5058.412 kb on - strandat 5058.497 kb on - strand, within PS417_23365

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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5,056,324 + PS417_23355 0.69 -0.8
5,056,324 + PS417_23355 0.69 +1.8
5,056,325 - PS417_23355 0.69 -1.4
5,056,468 + PS417_23355 0.81 +0.6
5,056,618 - -0.7
5,056,712 - -0.1
5,056,776 - -0.5
5,057,041 + -0.1
5,057,066 + -1.0
5,057,067 - +0.6
5,057,067 - -1.2
5,057,067 - +0.4
5,057,283 - PS417_23360 0.32 +0.5
5,058,161 - PS417_23365 0.23 -0.1
5,058,411 + PS417_23365 0.46 -0.7
5,058,411 + PS417_23365 0.46 +1.3
5,058,412 - +0.6
5,058,497 - PS417_23365 0.54 -1.0

Or see this region's nucleotide sequence