Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23045 and PS417_23050 are separated by 135 nucleotides PS417_23050 and PS417_23055 are separated by 238 nucleotides PS417_23055 and PS417_23060 are separated by 13 nucleotides
PS417_23045: PS417_23045 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) , at 4,994,486 to 4,996,132
_23045
PS417_23050: PS417_23050 - trehalose PTS system, EII-BC components TreB (from data) , at 4,996,268 to 4,997,710
_23050
PS417_23055: PS417_23055 - GntR family transcriptional regulator, at 4,997,949 to 4,998,653
_23055
PS417_23060: PS417_23060 - aminoglycoside phosphotransferase, at 4,998,667 to 4,999,437
_23060
Position (kb)
4996
4997
4998 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4995.465 kb on + strand, within PS417_23045 at 4995.936 kb on + strand, within PS417_23045 at 4996.024 kb on - strand at 4996.105 kb on - strand at 4996.105 kb on - strand at 4996.394 kb on - strand at 4996.750 kb on - strand, within PS417_23050 at 4996.966 kb on - strand, within PS417_23050 at 4997.002 kb on - strand, within PS417_23050 at 4997.043 kb on + strand, within PS417_23050 at 4997.697 kb on + strand at 4997.698 kb on - strand at 4997.785 kb on + strand at 4997.959 kb on - strand at 4997.959 kb on - strand at 4997.971 kb on - strand at 4998.426 kb on + strand, within PS417_23055 at 4998.426 kb on + strand, within PS417_23055 at 4998.595 kb on - strand at 4998.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 4,995,465 + PS417_23045 0.59 +0.2 4,995,936 + PS417_23045 0.88 +1.0 4,996,024 - -0.7 4,996,105 - +0.0 4,996,105 - +2.2 4,996,394 - +0.1 4,996,750 - PS417_23050 0.33 +0.6 4,996,966 - PS417_23050 0.48 +1.0 4,997,002 - PS417_23050 0.51 -0.1 4,997,043 + PS417_23050 0.54 +0.4 4,997,697 + -0.2 4,997,698 - -0.2 4,997,785 + -0.0 4,997,959 - +1.6 4,997,959 - -0.1 4,997,971 - +3.2 4,998,426 + PS417_23055 0.68 -0.2 4,998,426 + PS417_23055 0.68 -1.0 4,998,595 - -0.5 4,998,620 + -0.5
Or see this region's nucleotide sequence