Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18575 and PS417_18580 are separated by 250 nucleotides PS417_18580 and PS417_18585 are separated by 64 nucleotides
PS417_18575: PS417_18575 - aspartate-semialdehyde dehydrogenase, at 4,034,291 to 4,035,301
_18575
PS417_18580: PS417_18580 - aspartate-semialdehyde dehydrogenase, at 4,035,552 to 4,036,664
_18580
PS417_18585: PS417_18585 - 3-isopropylmalate dehydrogenase, at 4,036,729 to 4,037,811
_18585
Position (kb)
4035
4036
4037 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4034.652 kb on - strand, within PS417_18575 at 4034.652 kb on - strand, within PS417_18575 at 4034.674 kb on + strand, within PS417_18575 at 4034.674 kb on + strand, within PS417_18575 at 4034.675 kb on - strand, within PS417_18575 at 4034.675 kb on - strand, within PS417_18575 at 4034.675 kb on - strand, within PS417_18575 at 4034.695 kb on + strand, within PS417_18575 at 4035.181 kb on + strand, within PS417_18575 at 4035.231 kb on - strand at 4035.366 kb on - strand at 4036.672 kb on - strand at 4036.682 kb on - strand at 4036.983 kb on - strand, within PS417_18585 at 4036.996 kb on - strand, within PS417_18585 at 4037.147 kb on + strand, within PS417_18585 at 4037.147 kb on + strand, within PS417_18585 at 4037.148 kb on - strand, within PS417_18585 at 4037.148 kb on - strand, within PS417_18585 at 4037.174 kb on + strand, within PS417_18585 at 4037.232 kb on + strand, within PS417_18585 at 4037.337 kb on - strand, within PS417_18585 at 4037.391 kb on - strand, within PS417_18585
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 4,034,652 - PS417_18575 0.36 +0.1 4,034,652 - PS417_18575 0.36 -1.1 4,034,674 + PS417_18575 0.38 -0.4 4,034,674 + PS417_18575 0.38 -0.3 4,034,675 - PS417_18575 0.38 +1.3 4,034,675 - PS417_18575 0.38 -0.3 4,034,675 - PS417_18575 0.38 -0.8 4,034,695 + PS417_18575 0.40 -0.3 4,035,181 + PS417_18575 0.88 -0.1 4,035,231 - +0.1 4,035,366 - -0.5 4,036,672 - -1.4 4,036,682 - -0.0 4,036,983 - PS417_18585 0.23 -3.7 4,036,996 - PS417_18585 0.25 -0.7 4,037,147 + PS417_18585 0.39 -4.1 4,037,147 + PS417_18585 0.39 -1.7 4,037,148 - PS417_18585 0.39 -2.8 4,037,148 - PS417_18585 0.39 -0.9 4,037,174 + PS417_18585 0.41 -3.6 4,037,232 + PS417_18585 0.46 -2.1 4,037,337 - PS417_18585 0.56 -2.3 4,037,391 - PS417_18585 0.61 -1.5
Or see this region's nucleotide sequence