Strain Fitness in Pseudomonas simiae WCS417 around PS417_00170

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00165 and PS417_00170 are separated by 183 nucleotidesPS417_00170 and PS417_00175 are separated by 65 nucleotidesPS417_00175 and PS417_00180 are separated by 136 nucleotides PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755 _00165 PS417_00170: PS417_00170 - glucarate transporter, at 35,939 to 37,246 _00170 PS417_00175: PS417_00175 - CigR, at 37,312 to 37,752 _00175 PS417_00180: PS417_00180 - tryptophan synthase subunit alpha, at 37,889 to 38,698 _00180 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -2 -1 0 1at 34.955 kb on + strand, within PS417_00165at 35.213 kb on + strand, within PS417_00165at 35.213 kb on + strand, within PS417_00165at 35.213 kb on + strand, within PS417_00165at 35.214 kb on - strand, within PS417_00165at 35.214 kb on - strand, within PS417_00165at 35.357 kb on + strand, within PS417_00165at 35.438 kb on + strand, within PS417_00165at 35.516 kb on + strand, within PS417_00165at 35.517 kb on - strand, within PS417_00165at 35.517 kb on - strand, within PS417_00165at 35.517 kb on - strand, within PS417_00165at 35.582 kb on + strand, within PS417_00165at 35.582 kb on + strand, within PS417_00165at 35.609 kb on + strand, within PS417_00165at 35.609 kb on + strand, within PS417_00165at 35.672 kb on + strandat 35.673 kb on - strandat 35.673 kb on - strandat 35.673 kb on - strandat 35.916 kb on + strandat 35.922 kb on + strandat 35.973 kb on + strandat 35.983 kb on + strandat 36.144 kb on - strand, within PS417_00170at 36.201 kb on + strand, within PS417_00170at 36.201 kb on + strand, within PS417_00170at 36.202 kb on - strand, within PS417_00170at 36.202 kb on - strand, within PS417_00170at 36.202 kb on - strand, within PS417_00170at 36.202 kb on - strand, within PS417_00170at 36.203 kb on + strand, within PS417_00170at 36.204 kb on - strand, within PS417_00170at 36.204 kb on - strand, within PS417_00170at 36.204 kb on - strand, within PS417_00170at 36.386 kb on + strand, within PS417_00170at 36.386 kb on + strand, within PS417_00170at 36.387 kb on - strand, within PS417_00170at 36.683 kb on + strand, within PS417_00170at 36.683 kb on + strand, within PS417_00170at 36.684 kb on - strand, within PS417_00170at 36.684 kb on - strand, within PS417_00170at 36.756 kb on - strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.944 kb on + strand, within PS417_00170at 36.945 kb on - strand, within PS417_00170at 36.945 kb on - strand, within PS417_00170at 36.966 kb on + strand, within PS417_00170at 36.966 kb on + strand, within PS417_00170at 37.163 kb on - strandat 37.163 kb on - strandat 37.166 kb on + strandat 37.166 kb on + strandat 37.166 kb on + strandat 37.167 kb on - strandat 37.167 kb on - strandat 37.203 kb on - strandat 37.203 kb on - strandat 37.203 kb on - strandat 37.203 kb on - strandat 37.203 kb on - strandat 37.206 kb on + strandat 37.206 kb on + strandat 37.206 kb on + strandat 37.206 kb on + strandat 37.207 kb on - strandat 37.207 kb on - strandat 37.207 kb on - strandat 37.244 kb on + strandat 37.298 kb on - strandat 37.298 kb on - strandat 37.340 kb on + strandat 37.340 kb on + strandat 37.341 kb on - strandat 37.454 kb on + strand, within PS417_00175at 37.826 kb on - strandat 37.826 kb on - strandat 37.894 kb on + strandat 37.894 kb on + strandat 37.894 kb on + strandat 37.895 kb on - strandat 38.175 kb on + strand, within PS417_00180

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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34,955 + PS417_00165 0.30 +0.4
35,213 + PS417_00165 0.53 -0.7
35,213 + PS417_00165 0.53 -0.2
35,213 + PS417_00165 0.53 +0.0
35,214 - PS417_00165 0.53 +0.2
35,214 - PS417_00165 0.53 +1.3
35,357 + PS417_00165 0.65 +0.8
35,438 + PS417_00165 0.72 -0.5
35,516 + PS417_00165 0.79 +0.5
35,517 - PS417_00165 0.79 +1.5
35,517 - PS417_00165 0.79 -0.4
35,517 - PS417_00165 0.79 +0.0
35,582 + PS417_00165 0.85 +0.2
35,582 + PS417_00165 0.85 +0.9
35,609 + PS417_00165 0.87 -0.1
35,609 + PS417_00165 0.87 -0.2
35,672 + -0.1
35,673 - +0.9
35,673 - +0.2
35,673 - +0.4
35,916 + +0.5
35,922 + +0.7
35,973 + +0.2
35,983 + -0.5
36,144 - PS417_00170 0.16 -0.8
36,201 + PS417_00170 0.20 +0.5
36,201 + PS417_00170 0.20 +0.3
36,202 - PS417_00170 0.20 -0.8
36,202 - PS417_00170 0.20 -0.1
36,202 - PS417_00170 0.20 -0.4
36,202 - PS417_00170 0.20 -0.3
36,203 + PS417_00170 0.20 -0.3
36,204 - PS417_00170 0.20 -1.4
36,204 - PS417_00170 0.20 +0.8
36,204 - PS417_00170 0.20 -0.8
36,386 + PS417_00170 0.34 -0.3
36,386 + PS417_00170 0.34 -0.5
36,387 - PS417_00170 0.34 -2.1
36,683 + PS417_00170 0.57 -0.8
36,683 + PS417_00170 0.57 -0.2
36,684 - PS417_00170 0.57 +0.5
36,684 - PS417_00170 0.57 +0.2
36,756 - PS417_00170 0.62 -0.2
36,944 + PS417_00170 0.77 -1.9
36,944 + PS417_00170 0.77 +0.3
36,944 + PS417_00170 0.77 -1.9
36,944 + PS417_00170 0.77 -0.6
36,944 + PS417_00170 0.77 +0.2
36,944 + PS417_00170 0.77 -0.8
36,944 + PS417_00170 0.77 -0.4
36,944 + PS417_00170 0.77 -0.5
36,945 - PS417_00170 0.77 -0.3
36,945 - PS417_00170 0.77 -0.6
36,966 + PS417_00170 0.79 -0.5
36,966 + PS417_00170 0.79 +1.0
37,163 - +0.8
37,163 - -0.2
37,166 + +0.1
37,166 + -0.7
37,166 + +0.2
37,167 - +0.4
37,167 - +0.8
37,203 - -0.4
37,203 - -1.8
37,203 - -0.6
37,203 - +0.1
37,203 - -0.6
37,206 + +0.3
37,206 + -0.1
37,206 + -0.0
37,206 + -0.6
37,207 - +0.1
37,207 - +0.6
37,207 - +0.2
37,244 + -0.3
37,298 - +0.9
37,298 - -0.7
37,340 + +0.3
37,340 + -2.4
37,341 - -0.0
37,454 + PS417_00175 0.32 +0.4
37,826 - -0.1
37,826 - -0.7
37,894 + -0.3
37,894 + -0.0
37,894 + +0.9
37,895 - -1.6
38,175 + PS417_00180 0.35 -2.1

Or see this region's nucleotide sequence