Strain Fitness in Pseudomonas simiae WCS417 around PS417_15820

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15810 and PS417_15815 are separated by 125 nucleotidesPS417_15815 and PS417_15820 are separated by 36 nucleotidesPS417_15820 and PS417_15825 are separated by 319 nucleotides PS417_15810: PS417_15810 - hypothetical protein, at 3,463,988 to 3,464,317 _15810 PS417_15815: PS417_15815 - hydrolase, at 3,464,443 to 3,464,952 _15815 PS417_15820: PS417_15820 - universal stress protein UspA, at 3,464,989 to 3,465,891 _15820 PS417_15825: PS417_15825 - Crp/Fnr family transcriptional regulator, at 3,466,211 to 3,466,957 _15825 Position (kb) 3464 3465 3466Strain fitness (log2 ratio) -1 0 1 2at 3464.141 kb on - strand, within PS417_15810at 3464.173 kb on - strand, within PS417_15810at 3464.184 kb on + strand, within PS417_15810at 3464.217 kb on + strand, within PS417_15810at 3464.217 kb on + strandat 3464.218 kb on - strand, within PS417_15810at 3464.231 kb on + strandat 3464.257 kb on - strand, within PS417_15810at 3464.656 kb on + strand, within PS417_15815at 3464.656 kb on + strand, within PS417_15815at 3464.657 kb on - strand, within PS417_15815at 3464.657 kb on - strand, within PS417_15815at 3464.657 kb on - strand, within PS417_15815at 3464.658 kb on + strand, within PS417_15815at 3464.659 kb on - strand, within PS417_15815at 3464.950 kb on + strandat 3464.996 kb on - strandat 3465.601 kb on + strand, within PS417_15820at 3465.702 kb on - strand, within PS417_15820at 3465.767 kb on + strand, within PS417_15820at 3465.880 kb on - strandat 3466.016 kb on - strandat 3466.016 kb on - strandat 3466.020 kb on - strandat 3466.151 kb on - strandat 3466.177 kb on + strandat 3466.177 kb on + strandat 3466.374 kb on - strand, within PS417_15825at 3466.521 kb on + strand, within PS417_15825at 3466.521 kb on + strand, within PS417_15825at 3466.522 kb on - strand, within PS417_15825at 3466.522 kb on - strand, within PS417_15825at 3466.754 kb on + strand, within PS417_15825at 3466.805 kb on + strand, within PS417_15825at 3466.806 kb on - strand, within PS417_15825at 3466.809 kb on + strand, within PS417_15825at 3466.809 kb on + strand, within PS417_15825at 3466.809 kb on + strand, within PS417_15825at 3466.810 kb on - strand, within PS417_15825at 3466.810 kb on - strand, within PS417_15825

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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3,464,141 - PS417_15810 0.46 -0.6
3,464,173 - PS417_15810 0.56 -0.1
3,464,184 + PS417_15810 0.59 -1.6
3,464,217 + PS417_15810 0.69 +0.1
3,464,217 + +0.6
3,464,218 - PS417_15810 0.70 +0.3
3,464,231 + +2.2
3,464,257 - PS417_15810 0.82 +1.5
3,464,656 + PS417_15815 0.42 +0.2
3,464,656 + PS417_15815 0.42 +0.0
3,464,657 - PS417_15815 0.42 +0.1
3,464,657 - PS417_15815 0.42 -0.4
3,464,657 - PS417_15815 0.42 -0.6
3,464,658 + PS417_15815 0.42 -1.5
3,464,659 - PS417_15815 0.42 +0.5
3,464,950 + -0.4
3,464,996 - -1.0
3,465,601 + PS417_15820 0.68 -0.2
3,465,702 - PS417_15820 0.79 +1.2
3,465,767 + PS417_15820 0.86 +0.0
3,465,880 - +0.3
3,466,016 - +0.8
3,466,016 - -1.0
3,466,020 - +0.2
3,466,151 - -1.3
3,466,177 + +0.6
3,466,177 + -0.0
3,466,374 - PS417_15825 0.22 +0.3
3,466,521 + PS417_15825 0.41 +0.1
3,466,521 + PS417_15825 0.41 -0.2
3,466,522 - PS417_15825 0.42 -1.3
3,466,522 - PS417_15825 0.42 -0.2
3,466,754 + PS417_15825 0.73 +0.0
3,466,805 + PS417_15825 0.80 -0.4
3,466,806 - PS417_15825 0.80 +0.1
3,466,809 + PS417_15825 0.80 -0.2
3,466,809 + PS417_15825 0.80 -0.1
3,466,809 + PS417_15825 0.80 +0.0
3,466,810 - PS417_15825 0.80 -0.7
3,466,810 - PS417_15825 0.80 +0.3

Or see this region's nucleotide sequence