Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14200 and PS417_14205 are separated by 18 nucleotides PS417_14205 and PS417_14210 overlap by 4 nucleotides PS417_14210 and PS417_14215 are separated by 125 nucleotides PS417_14215 and PS417_14220 overlap by 29 nucleotides
PS417_14200: PS417_14200 - hypothetical protein, at 3,113,027 to 3,113,374
_14200
PS417_14205: PS417_14205 - hypothetical protein, at 3,113,393 to 3,114,214
_14205
PS417_14210: PS417_14210 - hypothetical protein, at 3,114,211 to 3,114,900
_14210
PS417_14215: PS417_14215 - diguanylate cyclase, at 3,115,026 to 3,115,553
_14215
PS417_14220: PS417_14220 - aldehyde-activating protein, at 3,115,525 to 3,115,998
_14220
Position (kb)
3114
3115 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3113.365 kb on - strand at 3113.482 kb on - strand, within PS417_14205 at 3113.485 kb on - strand, within PS417_14205 at 3113.597 kb on + strand, within PS417_14205 at 3113.597 kb on + strand, within PS417_14205 at 3113.597 kb on + strand, within PS417_14205 at 3113.598 kb on - strand, within PS417_14205 at 3113.598 kb on - strand, within PS417_14205 at 3113.978 kb on + strand, within PS417_14205 at 3113.978 kb on + strand, within PS417_14205 at 3113.979 kb on - strand, within PS417_14205 at 3113.979 kb on - strand, within PS417_14205 at 3113.979 kb on - strand, within PS417_14205 at 3114.287 kb on + strand, within PS417_14210 at 3114.287 kb on + strand, within PS417_14210 at 3114.287 kb on + strand at 3114.338 kb on + strand, within PS417_14210 at 3114.339 kb on - strand, within PS417_14210 at 3114.883 kb on + strand at 3114.883 kb on + strand at 3114.989 kb on + strand at 3114.989 kb on + strand at 3114.990 kb on - strand at 3115.062 kb on + strand at 3115.063 kb on - strand at 3115.090 kb on - strand at 3115.298 kb on + strand, within PS417_14215 at 3115.299 kb on - strand, within PS417_14215 at 3115.300 kb on + strand, within PS417_14215 at 3115.300 kb on + strand, within PS417_14215 at 3115.300 kb on + strand at 3115.300 kb on + strand at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.404 kb on - strand, within PS417_14215 at 3115.458 kb on - strand, within PS417_14215 at 3115.526 kb on + strand at 3115.610 kb on + strand, within PS417_14220 at 3115.610 kb on + strand, within PS417_14220 at 3115.610 kb on + strand, within PS417_14220 at 3115.711 kb on + strand, within PS417_14220 at 3115.712 kb on - strand, within PS417_14220 at 3115.779 kb on - strand, within PS417_14220
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 3,113,365 - +0.4 3,113,482 - PS417_14205 0.11 +0.1 3,113,485 - PS417_14205 0.11 -0.4 3,113,597 + PS417_14205 0.25 -0.1 3,113,597 + PS417_14205 0.25 +2.4 3,113,597 + PS417_14205 0.25 +0.2 3,113,598 - PS417_14205 0.25 +0.2 3,113,598 - PS417_14205 0.25 -0.5 3,113,978 + PS417_14205 0.71 -0.2 3,113,978 + PS417_14205 0.71 -1.0 3,113,979 - PS417_14205 0.71 -0.2 3,113,979 - PS417_14205 0.71 -0.5 3,113,979 - PS417_14205 0.71 +0.4 3,114,287 + PS417_14210 0.11 +0.6 3,114,287 + PS417_14210 0.11 +0.3 3,114,287 + +0.1 3,114,338 + PS417_14210 0.18 +0.6 3,114,339 - PS417_14210 0.19 +0.4 3,114,883 + +0.1 3,114,883 + -0.2 3,114,989 + -1.8 3,114,989 + +0.1 3,114,990 - +0.3 3,115,062 + +0.1 3,115,063 - +0.1 3,115,090 - +0.3 3,115,298 + PS417_14215 0.52 +0.4 3,115,299 - PS417_14215 0.52 -0.8 3,115,300 + PS417_14215 0.52 +0.5 3,115,300 + PS417_14215 0.52 +0.2 3,115,300 + -0.1 3,115,300 + -0.5 3,115,301 - PS417_14215 0.52 +0.2 3,115,301 - PS417_14215 0.52 -0.2 3,115,301 - PS417_14215 0.52 -0.2 3,115,301 - PS417_14215 0.52 +0.3 3,115,301 - PS417_14215 0.52 -0.6 3,115,301 - +0.4 3,115,301 - PS417_14215 0.52 -1.2 3,115,301 - PS417_14215 0.52 -0.3 3,115,404 - PS417_14215 0.72 -0.4 3,115,458 - PS417_14215 0.82 -0.2 3,115,526 + +1.0 3,115,610 + PS417_14220 0.18 -0.5 3,115,610 + PS417_14220 0.18 -0.6 3,115,610 + PS417_14220 0.18 +0.7 3,115,711 + PS417_14220 0.39 -1.7 3,115,712 - PS417_14220 0.39 +0.2 3,115,779 - PS417_14220 0.54 +0.7
Or see this region's nucleotide sequence