Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06645 and PS417_06650 are separated by 219 nucleotides PS417_06650 and PS417_06655 overlap by 4 nucleotides
PS417_06645: PS417_06645 - RNA polymerase-associated protein RapA, at 1,472,725 to 1,475,571
_06645
PS417_06650: PS417_06650 - aspartate-semialdehyde dehydrogenase, at 1,475,791 to 1,476,132
_06650
PS417_06655: PS417_06655 - class V aminotransferase, at 1,476,129 to 1,477,310
_06655
Position (kb)
1475
1476
1477 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1475.002 kb on + strand at 1475.318 kb on + strand at 1475.318 kb on + strand at 1475.319 kb on - strand at 1475.479 kb on + strand at 1475.603 kb on + strand at 1475.603 kb on + strand at 1475.603 kb on + strand at 1475.783 kb on + strand at 1475.783 kb on + strand at 1475.784 kb on - strand at 1475.790 kb on + strand at 1475.790 kb on + strand at 1475.790 kb on + strand at 1475.790 kb on + strand at 1475.790 kb on + strand at 1475.790 kb on + strand at 1475.791 kb on - strand at 1475.791 kb on - strand at 1475.791 kb on - strand at 1475.791 kb on - strand at 1475.791 kb on - strand at 1476.251 kb on - strand, within PS417_06655 at 1476.380 kb on + strand, within PS417_06655 at 1476.582 kb on + strand, within PS417_06655 at 1476.631 kb on + strand, within PS417_06655 at 1476.754 kb on + strand, within PS417_06655 at 1476.755 kb on - strand, within PS417_06655 at 1476.939 kb on + strand, within PS417_06655 at 1476.939 kb on + strand, within PS417_06655 at 1476.939 kb on + strand, within PS417_06655 at 1476.940 kb on - strand, within PS417_06655 at 1476.995 kb on + strand, within PS417_06655 at 1476.995 kb on + strand, within PS417_06655
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 1,475,002 + +1.5 1,475,318 + -2.2 1,475,318 + -0.2 1,475,319 - -0.3 1,475,479 + -1.8 1,475,603 + -2.5 1,475,603 + -3.9 1,475,603 + -0.6 1,475,783 + -0.0 1,475,783 + -0.2 1,475,784 - +1.5 1,475,790 + +0.1 1,475,790 + -0.5 1,475,790 + -2.2 1,475,790 + +0.4 1,475,790 + +0.3 1,475,790 + +0.0 1,475,791 - +0.1 1,475,791 - -0.2 1,475,791 - -0.7 1,475,791 - -0.0 1,475,791 - +0.1 1,476,251 - PS417_06655 0.10 +0.4 1,476,380 + PS417_06655 0.21 +0.6 1,476,582 + PS417_06655 0.38 +0.1 1,476,631 + PS417_06655 0.42 +0.6 1,476,754 + PS417_06655 0.53 -0.3 1,476,755 - PS417_06655 0.53 +0.1 1,476,939 + PS417_06655 0.69 +0.3 1,476,939 + PS417_06655 0.69 +0.8 1,476,939 + PS417_06655 0.69 +0.3 1,476,940 - PS417_06655 0.69 -0.1 1,476,995 + PS417_06655 0.73 -1.9 1,476,995 + PS417_06655 0.73 +0.2
Or see this region's nucleotide sequence