Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27490 and PS417_27495 are separated by 127 nucleotides PS417_27495 and PS417_27500 are separated by 231 nucleotides PS417_27500 and PS417_27505 are separated by 53 nucleotides PS417_27505 and PS417_27510 are separated by 209 nucleotides
PS417_27490: PS417_27490 - hypothetical protein, at 5,932,904 to 5,933,443
_27490
PS417_27495: PS417_27495 - hypothetical protein, at 5,933,571 to 5,933,816
_27495
PS417_27500: PS417_27500 - peptidylprolyl isomerase, at 5,934,048 to 5,934,725
_27500
PS417_27505: PS417_27505 - transcriptional regulator, at 5,934,779 to 5,935,237
_27505
PS417_27510: PS417_27510 - disulfide bond formation protein B, at 5,935,447 to 5,935,968
_27510
Position (kb) 5934
5935 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5933.279 kb on + strand, within PS417_27490 at 5933.280 kb on - strand, within PS417_27490 at 5933.554 kb on + strand at 5933.555 kb on - strand at 5933.709 kb on - strand, within PS417_27495 at 5933.815 kb on - strand at 5933.815 kb on - strand at 5933.831 kb on + strand at 5933.831 kb on + strand at 5933.832 kb on - strand at 5933.832 kb on - strand at 5933.861 kb on - strand at 5933.889 kb on + strand at 5933.889 kb on + strand at 5933.889 kb on + strand at 5933.889 kb on + strand at 5933.892 kb on + strand at 5933.892 kb on + strand at 5933.892 kb on + strand at 5933.892 kb on + strand at 5933.893 kb on - strand at 5933.893 kb on - strand at 5933.976 kb on - strand at 5933.999 kb on - strand at 5933.999 kb on - strand at 5934.016 kb on + strand at 5934.233 kb on - strand, within PS417_27500 at 5934.489 kb on + strand, within PS417_27500 at 5934.489 kb on + strand, within PS417_27500 at 5934.489 kb on + strand, within PS417_27500 at 5934.490 kb on - strand, within PS417_27500 at 5934.642 kb on + strand, within PS417_27500 at 5934.643 kb on - strand, within PS417_27500 at 5934.707 kb on - strand at 5934.707 kb on - strand at 5934.805 kb on + strand at 5934.805 kb on + strand at 5934.933 kb on - strand, within PS417_27505 at 5934.933 kb on - strand, within PS417_27505 at 5934.933 kb on - strand, within PS417_27505 at 5934.964 kb on - strand, within PS417_27505 at 5934.964 kb on - strand, within PS417_27505 at 5935.059 kb on + strand, within PS417_27505 at 5935.060 kb on - strand, within PS417_27505 at 5935.060 kb on - strand, within PS417_27505 at 5935.254 kb on + strand at 5935.254 kb on + strand at 5935.255 kb on - strand at 5935.360 kb on + strand at 5935.361 kb on - strand at 5935.361 kb on - strand at 5935.407 kb on + strand at 5935.418 kb on - strand at 5935.428 kb on + strand at 5935.649 kb on + strand, within PS417_27510 at 5935.649 kb on + strand, within PS417_27510 at 5935.650 kb on - strand, within PS417_27510 at 5935.650 kb on - strand, within PS417_27510
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 5,933,279 + PS417_27490 0.69 -0.3 5,933,280 - PS417_27490 0.70 +0.2 5,933,554 + -0.2 5,933,555 - -0.2 5,933,709 - PS417_27495 0.56 +0.5 5,933,815 - -0.7 5,933,815 - +0.2 5,933,831 + +0.2 5,933,831 + +0.5 5,933,832 - +0.7 5,933,832 - +0.3 5,933,861 - -0.2 5,933,889 + +0.1 5,933,889 + +0.7 5,933,889 + +0.1 5,933,889 + +0.1 5,933,892 + +0.1 5,933,892 + -0.1 5,933,892 + -0.3 5,933,892 + +0.2 5,933,893 - +0.1 5,933,893 - +1.4 5,933,976 - +0.5 5,933,999 - +0.2 5,933,999 - -0.6 5,934,016 + +0.1 5,934,233 - PS417_27500 0.27 -0.4 5,934,489 + PS417_27500 0.65 +1.2 5,934,489 + PS417_27500 0.65 -0.0 5,934,489 + PS417_27500 0.65 +1.1 5,934,490 - PS417_27500 0.65 +0.9 5,934,642 + PS417_27500 0.88 -1.4 5,934,643 - PS417_27500 0.88 +0.2 5,934,707 - -0.2 5,934,707 - -2.1 5,934,805 + +0.7 5,934,805 + -0.5 5,934,933 - PS417_27505 0.34 +0.7 5,934,933 - PS417_27505 0.34 +0.8 5,934,933 - PS417_27505 0.34 +0.3 5,934,964 - PS417_27505 0.40 +3.2 5,934,964 - PS417_27505 0.40 -1.5 5,935,059 + PS417_27505 0.61 -0.6 5,935,060 - PS417_27505 0.61 +0.2 5,935,060 - PS417_27505 0.61 -1.4 5,935,254 + +0.8 5,935,254 + +0.6 5,935,255 - -1.3 5,935,360 + +0.1 5,935,361 - -0.1 5,935,361 - -0.7 5,935,407 + -0.0 5,935,418 - -0.6 5,935,428 + +0.1 5,935,649 + PS417_27510 0.39 -0.4 5,935,649 + PS417_27510 0.39 +0.4 5,935,650 - PS417_27510 0.39 -0.4 5,935,650 - PS417_27510 0.39 -0.2
Or see this region's nucleotide sequence