Strain Fitness in Pseudomonas simiae WCS417 around PS417_22895

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22890 and PS417_22895 are separated by 141 nucleotidesPS417_22895 and PS417_22900 are separated by 143 nucleotidesPS417_22900 and PS417_22905 are separated by 82 nucleotides PS417_22890: PS417_22890 - protein-disulfide isomerase, at 4,961,281 to 4,962,012 _22890 PS417_22895: PS417_22895 - tyrosine recombinase XerD, at 4,962,154 to 4,963,050 _22895 PS417_22900: PS417_22900 - cytochrome C oxidase subunit II, at 4,963,194 to 4,963,607 _22900 PS417_22905: PS417_22905 - 50S ribosomal protein L19, at 4,963,690 to 4,964,040 _22905 Position (kb) 4962 4963 4964Strain fitness (log2 ratio) -1 0 1at 4962.184 kb on - strandat 4962.232 kb on + strandat 4962.474 kb on - strand, within PS417_22895at 4962.733 kb on + strand, within PS417_22895at 4962.733 kb on + strand, within PS417_22895at 4962.734 kb on - strand, within PS417_22895at 4962.795 kb on - strand, within PS417_22895at 4962.795 kb on - strand, within PS417_22895at 4962.848 kb on + strand, within PS417_22895at 4962.848 kb on + strand, within PS417_22895at 4963.050 kb on + strandat 4963.050 kb on + strandat 4963.083 kb on - strandat 4963.311 kb on + strand, within PS417_22900at 4963.311 kb on + strand, within PS417_22900at 4963.311 kb on + strand, within PS417_22900at 4963.611 kb on + strandat 4963.611 kb on + strandat 4963.611 kb on + strandat 4963.611 kb on + strandat 4963.611 kb on + strandat 4963.611 kb on + strandat 4963.612 kb on - strandat 4963.612 kb on - strandat 4963.615 kb on + strandat 4963.615 kb on + strandat 4963.615 kb on + strandat 4963.625 kb on + strandat 4963.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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4,962,184 - +0.4
4,962,232 + +0.7
4,962,474 - PS417_22895 0.36 +0.4
4,962,733 + PS417_22895 0.65 +0.4
4,962,733 + PS417_22895 0.65 +0.9
4,962,734 - PS417_22895 0.65 +1.0
4,962,795 - PS417_22895 0.71 +0.7
4,962,795 - PS417_22895 0.71 +0.6
4,962,848 + PS417_22895 0.77 +1.0
4,962,848 + PS417_22895 0.77 +0.6
4,963,050 + +0.5
4,963,050 + +0.5
4,963,083 - -0.4
4,963,311 + PS417_22900 0.28 -0.3
4,963,311 + PS417_22900 0.28 -0.1
4,963,311 + PS417_22900 0.28 +0.0
4,963,611 + -0.1
4,963,611 + +0.4
4,963,611 + +0.2
4,963,611 + -0.7
4,963,611 + -0.1
4,963,611 + +0.3
4,963,612 - -1.3
4,963,612 - -0.5
4,963,615 + -0.3
4,963,615 + +0.5
4,963,615 + +0.6
4,963,625 + -0.9
4,963,626 - -0.1

Or see this region's nucleotide sequence