Strain Fitness in Pseudomonas simiae WCS417 around PS417_22015

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22010 and PS417_22015 are separated by 133 nucleotidesPS417_22015 and PS417_22020 are separated by 113 nucleotides PS417_22010: PS417_22010 - MFS transporter, at 4,771,742 to 4,773,154 _22010 PS417_22015: PS417_22015 - hypothetical protein, at 4,773,288 to 4,773,785 _22015 PS417_22020: PS417_22020 - pili assembly chaperone, at 4,773,899 to 4,775,218 _22020 Position (kb) 4773 4774Strain fitness (log2 ratio) -1 0 1 2at 4772.380 kb on + strand, within PS417_22010at 4772.380 kb on + strand, within PS417_22010at 4773.213 kb on + strandat 4773.243 kb on - strandat 4773.524 kb on - strand, within PS417_22015at 4773.571 kb on - strand, within PS417_22015at 4774.213 kb on + strand, within PS417_22020at 4774.214 kb on - strand, within PS417_22020at 4774.476 kb on + strand, within PS417_22020at 4774.476 kb on + strand, within PS417_22020at 4774.477 kb on - strand, within PS417_22020at 4774.477 kb on - strand, within PS417_22020at 4774.510 kb on - strand, within PS417_22020at 4774.510 kb on - strand, within PS417_22020at 4774.609 kb on - strand, within PS417_22020at 4774.609 kb on - strand, within PS417_22020at 4774.680 kb on + strand, within PS417_22020

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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4,772,380 + PS417_22010 0.45 +0.4
4,772,380 + PS417_22010 0.45 -0.4
4,773,213 + +2.3
4,773,243 - +0.0
4,773,524 - PS417_22015 0.47 +1.0
4,773,571 - PS417_22015 0.57 -0.1
4,774,213 + PS417_22020 0.24 +0.2
4,774,214 - PS417_22020 0.24 +0.1
4,774,476 + PS417_22020 0.44 -0.1
4,774,476 + PS417_22020 0.44 -0.4
4,774,477 - PS417_22020 0.44 +0.4
4,774,477 - PS417_22020 0.44 -0.3
4,774,510 - PS417_22020 0.46 +0.2
4,774,510 - PS417_22020 0.46 -0.6
4,774,609 - PS417_22020 0.54 -0.1
4,774,609 - PS417_22020 0.54 -0.3
4,774,680 + PS417_22020 0.59 +1.3

Or see this region's nucleotide sequence