Strain Fitness in Pseudomonas simiae WCS417 around PS417_19820

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19815 and PS417_19820 are separated by 7 nucleotidesPS417_19820 and PS417_19825 are separated by 110 nucleotides PS417_19815: PS417_19815 - Fis family transcriptional regulator, at 4,301,716 to 4,303,092 _19815 PS417_19820: PS417_19820 - histidine kinase, at 4,303,100 to 4,304,311 _19820 PS417_19825: PS417_19825 - ATPase AAA, at 4,304,422 to 4,305,897 _19825 Position (kb) 4303 4304 4305Strain fitness (log2 ratio) -2 -1 0 1 2at 4302.585 kb on - strand, within PS417_19815at 4303.008 kb on - strandat 4303.092 kb on + strandat 4303.102 kb on - strandat 4303.256 kb on - strand, within PS417_19820at 4303.347 kb on + strand, within PS417_19820at 4303.348 kb on - strand, within PS417_19820at 4303.588 kb on + strand, within PS417_19820at 4303.692 kb on + strand, within PS417_19820at 4303.692 kb on + strand, within PS417_19820at 4303.693 kb on - strand, within PS417_19820at 4303.693 kb on - strand, within PS417_19820at 4303.693 kb on - strand, within PS417_19820at 4304.144 kb on - strand, within PS417_19820at 4304.176 kb on - strand, within PS417_19820at 4304.252 kb on + strandat 4304.465 kb on + strandat 4304.465 kb on + strandat 4304.466 kb on - strandat 4304.588 kb on + strand, within PS417_19825at 4304.589 kb on - strand, within PS417_19825at 4304.987 kb on + strandat 4304.987 kb on + strand, within PS417_19825at 4304.987 kb on + strand, within PS417_19825at 4304.987 kb on + strand, within PS417_19825at 4305.102 kb on + strand, within PS417_19825at 4305.103 kb on - strand, within PS417_19825

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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4,302,585 - PS417_19815 0.63 -1.9
4,303,008 - -0.8
4,303,092 + +0.2
4,303,102 - +0.2
4,303,256 - PS417_19820 0.13 +0.3
4,303,347 + PS417_19820 0.20 +1.6
4,303,348 - PS417_19820 0.20 +0.4
4,303,588 + PS417_19820 0.40 +1.2
4,303,692 + PS417_19820 0.49 -0.1
4,303,692 + PS417_19820 0.49 -0.5
4,303,693 - PS417_19820 0.49 +0.2
4,303,693 - PS417_19820 0.49 +0.1
4,303,693 - PS417_19820 0.49 +1.2
4,304,144 - PS417_19820 0.86 +1.4
4,304,176 - PS417_19820 0.89 +0.4
4,304,252 + -0.1
4,304,465 + +2.1
4,304,465 + +0.4
4,304,466 - +1.0
4,304,588 + PS417_19825 0.11 +0.9
4,304,589 - PS417_19825 0.11 +1.2
4,304,987 + -0.5
4,304,987 + PS417_19825 0.38 +1.1
4,304,987 + PS417_19825 0.38 +1.3
4,304,987 + PS417_19825 0.38 +0.9
4,305,102 + PS417_19825 0.46 +0.9
4,305,103 - PS417_19825 0.46 +1.1

Or see this region's nucleotide sequence