Strain Fitness in Pseudomonas simiae WCS417 around PS417_19795

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19790 and PS417_19795 overlap by 11 nucleotidesPS417_19795 and PS417_19800 are separated by 10 nucleotides PS417_19790: PS417_19790 - ATP synthase, at 4,296,325 to 4,297,683 _19790 PS417_19795: PS417_19795 - flagellar assembly protein FliH, at 4,297,673 to 4,298,437 _19795 PS417_19800: PS417_19800 - flagellar motor switch protein FliG, at 4,298,448 to 4,299,467 _19800 Position (kb) 4297 4298 4299Strain fitness (log2 ratio) -1 0 1 2at 4296.729 kb on - strand, within PS417_19790at 4296.729 kb on - strandat 4297.144 kb on - strand, within PS417_19790at 4297.144 kb on - strand, within PS417_19790at 4297.926 kb on + strand, within PS417_19795at 4297.926 kb on + strand, within PS417_19795at 4297.927 kb on - strand, within PS417_19795at 4297.927 kb on - strand, within PS417_19795at 4297.934 kb on + strand, within PS417_19795at 4297.934 kb on + strand, within PS417_19795at 4297.935 kb on - strand, within PS417_19795at 4297.935 kb on - strand, within PS417_19795at 4297.935 kb on - strand, within PS417_19795at 4298.227 kb on - strand, within PS417_19795at 4298.243 kb on - strand, within PS417_19795at 4298.449 kb on + strandat 4298.449 kb on + strandat 4298.449 kb on + strandat 4298.449 kb on + strandat 4298.449 kb on + strandat 4298.450 kb on - strandat 4298.450 kb on - strandat 4299.220 kb on + strandat 4299.221 kb on - strand, within PS417_19800at 4299.221 kb on - strand, within PS417_19800

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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4,296,729 - PS417_19790 0.30 +0.9
4,296,729 - -0.4
4,297,144 - PS417_19790 0.60 +1.8
4,297,144 - PS417_19790 0.60 +0.1
4,297,926 + PS417_19795 0.33 +0.6
4,297,926 + PS417_19795 0.33 +1.0
4,297,927 - PS417_19795 0.33 +1.0
4,297,927 - PS417_19795 0.33 +1.0
4,297,934 + PS417_19795 0.34 +0.9
4,297,934 + PS417_19795 0.34 +1.1
4,297,935 - PS417_19795 0.34 +1.0
4,297,935 - PS417_19795 0.34 +1.2
4,297,935 - PS417_19795 0.34 +0.9
4,298,227 - PS417_19795 0.72 +0.9
4,298,243 - PS417_19795 0.75 +1.5
4,298,449 + -0.5
4,298,449 + +0.9
4,298,449 + +1.3
4,298,449 + +0.1
4,298,449 + +1.1
4,298,450 - +0.1
4,298,450 - -1.1
4,299,220 + +2.1
4,299,221 - PS417_19800 0.76 +0.7
4,299,221 - PS417_19800 0.76 +0.7

Or see this region's nucleotide sequence