Strain Fitness in Pseudomonas simiae WCS417 around PS417_17795

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17790 and PS417_17795 overlap by 1 nucleotidesPS417_17795 and PS417_17800 are separated by 8 nucleotides PS417_17790: PS417_17790 - ABC transporter, at 3,884,570 to 3,885,283 _17790 PS417_17795: PS417_17795 - ABC transporter permease, at 3,885,283 to 3,886,026 _17795 PS417_17800: PS417_17800 - microcin B17-processing protein McbD, at 3,886,035 to 3,887,228 _17800 Position (kb) 3885 3886 3887Strain fitness (log2 ratio) -1 0 1 2at 3884.322 kb on + strandat 3884.322 kb on + strandat 3884.397 kb on - strandat 3884.558 kb on + strandat 3884.559 kb on - strandat 3884.600 kb on - strandat 3884.618 kb on - strandat 3884.618 kb on - strandat 3884.628 kb on + strandat 3884.629 kb on - strandat 3884.688 kb on + strand, within PS417_17790at 3884.688 kb on + strand, within PS417_17790at 3884.688 kb on + strand, within PS417_17790at 3884.688 kb on + strandat 3884.689 kb on - strand, within PS417_17790at 3884.832 kb on - strand, within PS417_17790at 3884.893 kb on - strand, within PS417_17790at 3885.047 kb on + strand, within PS417_17790at 3885.048 kb on - strand, within PS417_17790at 3885.192 kb on - strand, within PS417_17790at 3885.223 kb on + strandat 3885.224 kb on - strandat 3885.573 kb on + strand, within PS417_17795at 3885.735 kb on + strand, within PS417_17795at 3885.853 kb on - strand, within PS417_17795at 3886.322 kb on - strand, within PS417_17800at 3886.460 kb on + strand, within PS417_17800at 3886.531 kb on - strand, within PS417_17800at 3886.612 kb on + strand, within PS417_17800at 3886.825 kb on + strand, within PS417_17800at 3886.826 kb on - strand, within PS417_17800at 3886.841 kb on + strandat 3886.866 kb on - strand, within PS417_17800at 3886.908 kb on - strand, within PS417_17800at 3886.910 kb on - strand, within PS417_17800

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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3,884,322 + -1.2
3,884,322 + +0.6
3,884,397 - -0.8
3,884,558 + +0.1
3,884,559 - -0.1
3,884,600 - +0.4
3,884,618 - -1.4
3,884,618 - +0.1
3,884,628 + +0.5
3,884,629 - +0.4
3,884,688 + PS417_17790 0.17 +0.3
3,884,688 + PS417_17790 0.17 +1.6
3,884,688 + PS417_17790 0.17 -0.5
3,884,688 + +2.6
3,884,689 - PS417_17790 0.17 -1.5
3,884,832 - PS417_17790 0.37 -0.1
3,884,893 - PS417_17790 0.45 -0.3
3,885,047 + PS417_17790 0.67 -0.0
3,885,048 - PS417_17790 0.67 +0.5
3,885,192 - PS417_17790 0.87 +1.2
3,885,223 + -0.8
3,885,224 - +0.1
3,885,573 + PS417_17795 0.39 +1.2
3,885,735 + PS417_17795 0.61 -0.6
3,885,853 - PS417_17795 0.77 +0.2
3,886,322 - PS417_17800 0.24 -0.3
3,886,460 + PS417_17800 0.36 -0.8
3,886,531 - PS417_17800 0.42 -0.1
3,886,612 + PS417_17800 0.48 -0.2
3,886,825 + PS417_17800 0.66 -0.1
3,886,826 - PS417_17800 0.66 +0.1
3,886,841 + +0.2
3,886,866 - PS417_17800 0.70 +0.2
3,886,908 - PS417_17800 0.73 +0.1
3,886,910 - PS417_17800 0.73 -0.2

Or see this region's nucleotide sequence