Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17580 and PS417_17585 are separated by 16 nucleotides PS417_17585 and PS417_17590 are separated by 244 nucleotides
PS417_17580: PS417_17580 - citrulline utilization hydrolase (from data) , at 3,838,488 to 3,839,414
_17580
PS417_17585: PS417_17585 - ornithine cyclodeaminase, at 3,839,431 to 3,840,477
_17585
PS417_17590: PS417_17590 - ABC transporter substrate-binding protein, at 3,840,722 to 3,841,498
_17590
Position (kb)
3839
3840
3841 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3838.630 kb on - strand, within PS417_17580 at 3838.630 kb on - strand, within PS417_17580 at 3838.630 kb on - strand, within PS417_17580 at 3838.930 kb on - strand, within PS417_17580 at 3839.324 kb on - strand at 3839.464 kb on + strand at 3839.515 kb on + strand at 3839.531 kb on - strand at 3839.638 kb on + strand, within PS417_17585 at 3839.639 kb on - strand, within PS417_17585 at 3840.312 kb on - strand, within PS417_17585 at 3840.346 kb on + strand, within PS417_17585 at 3840.346 kb on + strand, within PS417_17585 at 3840.701 kb on + strand at 3840.708 kb on + strand at 3840.711 kb on - strand at 3841.057 kb on + strand, within PS417_17590 at 3841.223 kb on + strand, within PS417_17590 at 3841.223 kb on + strand, within PS417_17590 at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.445 kb on + strand at 3841.446 kb on - strand at 3841.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 3,838,630 - PS417_17580 0.15 -1.9 3,838,630 - PS417_17580 0.15 -2.9 3,838,630 - PS417_17580 0.15 -2.4 3,838,930 - PS417_17580 0.48 -1.6 3,839,324 - -0.9 3,839,464 + -0.4 3,839,515 + -2.1 3,839,531 - -2.2 3,839,638 + PS417_17585 0.20 -1.9 3,839,639 - PS417_17585 0.20 -1.6 3,840,312 - PS417_17585 0.84 -1.7 3,840,346 + PS417_17585 0.87 -2.4 3,840,346 + PS417_17585 0.87 -1.0 3,840,701 + +0.3 3,840,708 + +0.3 3,840,711 - -2.1 3,841,057 + PS417_17590 0.43 -2.7 3,841,223 + PS417_17590 0.64 -2.6 3,841,223 + PS417_17590 0.64 -2.0 3,841,445 + -1.5 3,841,445 + -1.8 3,841,445 + +0.1 3,841,445 + -0.0 3,841,446 - -2.2 3,841,467 - -1.8
Or see this region's nucleotide sequence