Strain Fitness in Pseudomonas simiae WCS417 around PS417_14565

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14560 and PS417_14565 are separated by 169 nucleotidesPS417_14565 and PS417_14575 are separated by 437 nucleotides PS417_14560: PS417_14560 - TonB-dependent receptor, at 3,182,417 to 3,184,570 _14560 PS417_14565: PS417_14565 - chemotaxis protein, at 3,184,740 to 3,186,233 _14565 PS417_14575: PS417_14575 - MFS transporter, at 3,186,671 to 3,188,008 _14575 Position (kb) 3184 3185 3186 3187Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3183.821 kb on + strandat 3183.822 kb on - strand, within PS417_14560at 3184.076 kb on + strand, within PS417_14560at 3184.077 kb on - strand, within PS417_14560at 3184.095 kb on + strand, within PS417_14560at 3184.109 kb on - strand, within PS417_14560at 3184.165 kb on + strand, within PS417_14560at 3184.165 kb on + strand, within PS417_14560at 3184.166 kb on - strand, within PS417_14560at 3184.185 kb on - strand, within PS417_14560at 3184.198 kb on + strand, within PS417_14560at 3184.317 kb on - strand, within PS417_14560at 3184.334 kb on + strand, within PS417_14560at 3184.334 kb on + strand, within PS417_14560at 3184.335 kb on - strand, within PS417_14560at 3184.363 kb on + strandat 3184.363 kb on + strandat 3184.364 kb on - strandat 3184.364 kb on - strandat 3184.364 kb on - strandat 3184.367 kb on + strandat 3184.388 kb on + strandat 3184.475 kb on + strandat 3184.476 kb on - strandat 3184.476 kb on - strandat 3184.523 kb on + strandat 3184.524 kb on - strandat 3184.560 kb on - strandat 3184.638 kb on + strandat 3184.639 kb on - strandat 3184.732 kb on - strandat 3184.908 kb on + strand, within PS417_14565at 3185.111 kb on - strand, within PS417_14565at 3185.197 kb on - strand, within PS417_14565at 3185.226 kb on + strand, within PS417_14565at 3185.227 kb on - strand, within PS417_14565at 3185.227 kb on - strandat 3186.334 kb on - strandat 3186.419 kb on + strandat 3186.419 kb on + strandat 3186.420 kb on - strandat 3186.487 kb on - strandat 3186.497 kb on + strandat 3186.498 kb on - strandat 3186.506 kb on - strandat 3186.979 kb on - strand, within PS417_14575at 3186.982 kb on - strand, within PS417_14575at 3187.134 kb on - strand, within PS417_14575at 3187.134 kb on - strandat 3187.193 kb on + strand, within PS417_14575

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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3,183,821 + -2.2
3,183,822 - PS417_14560 0.65 +0.9
3,184,076 + PS417_14560 0.77 -0.4
3,184,077 - PS417_14560 0.77 -0.8
3,184,095 + PS417_14560 0.78 +0.6
3,184,109 - PS417_14560 0.79 -0.2
3,184,165 + PS417_14560 0.81 +1.0
3,184,165 + PS417_14560 0.81 -0.8
3,184,166 - PS417_14560 0.81 +0.4
3,184,185 - PS417_14560 0.82 -0.1
3,184,198 + PS417_14560 0.83 -0.6
3,184,317 - PS417_14560 0.88 -0.6
3,184,334 + PS417_14560 0.89 +0.1
3,184,334 + PS417_14560 0.89 -0.0
3,184,335 - PS417_14560 0.89 +0.3
3,184,363 + +0.4
3,184,363 + -0.6
3,184,364 - +0.8
3,184,364 - -0.4
3,184,364 - +0.6
3,184,367 + -0.3
3,184,388 + +0.3
3,184,475 + -1.3
3,184,476 - +0.8
3,184,476 - -0.2
3,184,523 + +0.1
3,184,524 - -1.5
3,184,560 - -0.0
3,184,638 + -0.0
3,184,639 - +1.8
3,184,732 - -0.9
3,184,908 + PS417_14565 0.11 +0.6
3,185,111 - PS417_14565 0.25 -1.2
3,185,197 - PS417_14565 0.31 +0.4
3,185,226 + PS417_14565 0.33 +0.5
3,185,227 - PS417_14565 0.33 +0.6
3,185,227 - +3.1
3,186,334 - -0.2
3,186,419 + +1.4
3,186,419 + +1.4
3,186,420 - -0.2
3,186,487 - -0.1
3,186,497 + +0.5
3,186,498 - +0.4
3,186,506 - +0.3
3,186,979 - PS417_14575 0.23 -0.0
3,186,982 - PS417_14575 0.23 +0.4
3,187,134 - PS417_14575 0.35 -0.2
3,187,134 - -0.5
3,187,193 + PS417_14575 0.39 +0.2

Or see this region's nucleotide sequence