Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14560 and PS417_14565 are separated by 169 nucleotides PS417_14565 and PS417_14575 are separated by 437 nucleotides
PS417_14560: PS417_14560 - TonB-dependent receptor, at 3,182,417 to 3,184,570
_14560
PS417_14565: PS417_14565 - chemotaxis protein, at 3,184,740 to 3,186,233
_14565
PS417_14575: PS417_14575 - MFS transporter, at 3,186,671 to 3,188,008
_14575
Position (kb)
3184
3185
3186
3187 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3183.821 kb on + strand at 3183.822 kb on - strand, within PS417_14560 at 3184.076 kb on + strand, within PS417_14560 at 3184.077 kb on - strand, within PS417_14560 at 3184.095 kb on + strand, within PS417_14560 at 3184.109 kb on - strand, within PS417_14560 at 3184.165 kb on + strand, within PS417_14560 at 3184.165 kb on + strand, within PS417_14560 at 3184.166 kb on - strand, within PS417_14560 at 3184.185 kb on - strand, within PS417_14560 at 3184.198 kb on + strand, within PS417_14560 at 3184.317 kb on - strand, within PS417_14560 at 3184.334 kb on + strand, within PS417_14560 at 3184.334 kb on + strand, within PS417_14560 at 3184.335 kb on - strand, within PS417_14560 at 3184.363 kb on + strand at 3184.363 kb on + strand at 3184.364 kb on - strand at 3184.364 kb on - strand at 3184.364 kb on - strand at 3184.367 kb on + strand at 3184.388 kb on + strand at 3184.475 kb on + strand at 3184.476 kb on - strand at 3184.476 kb on - strand at 3184.523 kb on + strand at 3184.524 kb on - strand at 3184.560 kb on - strand at 3184.638 kb on + strand at 3184.639 kb on - strand at 3184.732 kb on - strand at 3184.908 kb on + strand, within PS417_14565 at 3185.111 kb on - strand, within PS417_14565 at 3185.197 kb on - strand, within PS417_14565 at 3185.226 kb on + strand, within PS417_14565 at 3185.227 kb on - strand, within PS417_14565 at 3185.227 kb on - strand at 3186.334 kb on - strand at 3186.419 kb on + strand at 3186.419 kb on + strand at 3186.420 kb on - strand at 3186.487 kb on - strand at 3186.497 kb on + strand at 3186.498 kb on - strand at 3186.506 kb on - strand at 3186.979 kb on - strand, within PS417_14575 at 3186.982 kb on - strand, within PS417_14575 at 3187.134 kb on - strand, within PS417_14575 at 3187.134 kb on - strand at 3187.193 kb on + strand, within PS417_14575
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 3,183,821 + -2.2 3,183,822 - PS417_14560 0.65 +0.9 3,184,076 + PS417_14560 0.77 -0.4 3,184,077 - PS417_14560 0.77 -0.8 3,184,095 + PS417_14560 0.78 +0.6 3,184,109 - PS417_14560 0.79 -0.2 3,184,165 + PS417_14560 0.81 +1.0 3,184,165 + PS417_14560 0.81 -0.8 3,184,166 - PS417_14560 0.81 +0.4 3,184,185 - PS417_14560 0.82 -0.1 3,184,198 + PS417_14560 0.83 -0.6 3,184,317 - PS417_14560 0.88 -0.6 3,184,334 + PS417_14560 0.89 +0.1 3,184,334 + PS417_14560 0.89 -0.0 3,184,335 - PS417_14560 0.89 +0.3 3,184,363 + +0.4 3,184,363 + -0.6 3,184,364 - +0.8 3,184,364 - -0.4 3,184,364 - +0.6 3,184,367 + -0.3 3,184,388 + +0.3 3,184,475 + -1.3 3,184,476 - +0.8 3,184,476 - -0.2 3,184,523 + +0.1 3,184,524 - -1.5 3,184,560 - -0.0 3,184,638 + -0.0 3,184,639 - +1.8 3,184,732 - -0.9 3,184,908 + PS417_14565 0.11 +0.6 3,185,111 - PS417_14565 0.25 -1.2 3,185,197 - PS417_14565 0.31 +0.4 3,185,226 + PS417_14565 0.33 +0.5 3,185,227 - PS417_14565 0.33 +0.6 3,185,227 - +3.1 3,186,334 - -0.2 3,186,419 + +1.4 3,186,419 + +1.4 3,186,420 - -0.2 3,186,487 - -0.1 3,186,497 + +0.5 3,186,498 - +0.4 3,186,506 - +0.3 3,186,979 - PS417_14575 0.23 -0.0 3,186,982 - PS417_14575 0.23 +0.4 3,187,134 - PS417_14575 0.35 -0.2 3,187,134 - -0.5 3,187,193 + PS417_14575 0.39 +0.2
Or see this region's nucleotide sequence