Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14200 and PS417_14205 are separated by 18 nucleotides PS417_14205 and PS417_14210 overlap by 4 nucleotides PS417_14210 and PS417_14215 are separated by 125 nucleotides PS417_14215 and PS417_14220 overlap by 29 nucleotides
PS417_14200: PS417_14200 - hypothetical protein, at 3,113,027 to 3,113,374
_14200
PS417_14205: PS417_14205 - hypothetical protein, at 3,113,393 to 3,114,214
_14205
PS417_14210: PS417_14210 - hypothetical protein, at 3,114,211 to 3,114,900
_14210
PS417_14215: PS417_14215 - diguanylate cyclase, at 3,115,026 to 3,115,553
_14215
PS417_14220: PS417_14220 - aldehyde-activating protein, at 3,115,525 to 3,115,998
_14220
Position (kb)
3114
3115 Strain fitness (log2 ratio)
-2
-1
0
1 at 3113.365 kb on - strand at 3113.482 kb on - strand, within PS417_14205 at 3113.485 kb on - strand, within PS417_14205 at 3113.597 kb on + strand, within PS417_14205 at 3113.597 kb on + strand, within PS417_14205 at 3113.597 kb on + strand, within PS417_14205 at 3113.598 kb on - strand, within PS417_14205 at 3113.598 kb on - strand, within PS417_14205 at 3113.978 kb on + strand, within PS417_14205 at 3113.978 kb on + strand, within PS417_14205 at 3113.979 kb on - strand, within PS417_14205 at 3113.979 kb on - strand, within PS417_14205 at 3113.979 kb on - strand, within PS417_14205 at 3114.287 kb on + strand, within PS417_14210 at 3114.287 kb on + strand, within PS417_14210 at 3114.287 kb on + strand at 3114.338 kb on + strand, within PS417_14210 at 3114.339 kb on - strand, within PS417_14210 at 3114.883 kb on + strand at 3114.883 kb on + strand at 3114.989 kb on + strand at 3114.989 kb on + strand at 3114.990 kb on - strand at 3115.062 kb on + strand at 3115.063 kb on - strand at 3115.090 kb on - strand at 3115.298 kb on + strand, within PS417_14215 at 3115.299 kb on - strand, within PS417_14215 at 3115.300 kb on + strand, within PS417_14215 at 3115.300 kb on + strand, within PS417_14215 at 3115.300 kb on + strand at 3115.300 kb on + strand at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand at 3115.301 kb on - strand, within PS417_14215 at 3115.301 kb on - strand, within PS417_14215 at 3115.404 kb on - strand, within PS417_14215 at 3115.458 kb on - strand, within PS417_14215 at 3115.526 kb on + strand at 3115.610 kb on + strand, within PS417_14220 at 3115.610 kb on + strand, within PS417_14220 at 3115.610 kb on + strand, within PS417_14220 at 3115.711 kb on + strand, within PS417_14220 at 3115.712 kb on - strand, within PS417_14220 at 3115.779 kb on - strand, within PS417_14220
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 3,113,365 - -0.2 3,113,482 - PS417_14205 0.11 +1.1 3,113,485 - PS417_14205 0.11 +0.9 3,113,597 + PS417_14205 0.25 -1.0 3,113,597 + PS417_14205 0.25 +1.4 3,113,597 + PS417_14205 0.25 +0.5 3,113,598 - PS417_14205 0.25 +1.1 3,113,598 - PS417_14205 0.25 -0.4 3,113,978 + PS417_14205 0.71 +0.1 3,113,978 + PS417_14205 0.71 +0.2 3,113,979 - PS417_14205 0.71 -0.2 3,113,979 - PS417_14205 0.71 -1.8 3,113,979 - PS417_14205 0.71 +0.5 3,114,287 + PS417_14210 0.11 +0.7 3,114,287 + PS417_14210 0.11 +0.2 3,114,287 + -0.2 3,114,338 + PS417_14210 0.18 +1.4 3,114,339 - PS417_14210 0.19 +0.5 3,114,883 + -0.9 3,114,883 + +0.0 3,114,989 + +0.0 3,114,989 + +0.8 3,114,990 - -0.1 3,115,062 + -0.9 3,115,063 - +0.8 3,115,090 - -2.0 3,115,298 + PS417_14215 0.52 -0.2 3,115,299 - PS417_14215 0.52 -0.9 3,115,300 + PS417_14215 0.52 -1.8 3,115,300 + PS417_14215 0.52 -0.3 3,115,300 + -1.4 3,115,300 + -0.8 3,115,301 - PS417_14215 0.52 +0.0 3,115,301 - PS417_14215 0.52 +0.1 3,115,301 - PS417_14215 0.52 +0.1 3,115,301 - PS417_14215 0.52 +0.0 3,115,301 - PS417_14215 0.52 -0.2 3,115,301 - +0.6 3,115,301 - PS417_14215 0.52 -0.2 3,115,301 - PS417_14215 0.52 -0.7 3,115,404 - PS417_14215 0.72 -1.7 3,115,458 - PS417_14215 0.82 -0.7 3,115,526 + +1.2 3,115,610 + PS417_14220 0.18 -0.8 3,115,610 + PS417_14220 0.18 +0.1 3,115,610 + PS417_14220 0.18 +0.7 3,115,711 + PS417_14220 0.39 -0.7 3,115,712 - PS417_14220 0.39 +0.1 3,115,779 - PS417_14220 0.54 -1.4
Or see this region's nucleotide sequence